YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PMR1
Organism: Saccharomyces cerevisiae
Length: 950 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMR1.

Description E-value Query
Range		 Subject
Range
AT1A1_CATCO - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Catostomus commersonii GN=atp1a1 PE=2 SV=1
 0.0 [2..947] [6..1027]
AT1A2_RAT - Sodium/potassium-transporting ATPase subunit alpha-2 OS=Rattus norvegicus GN=Atp1a2 PE=1 SV=1
AT1A2_MOUSE - Sodium/potassium-transporting ATPase subunit alpha-2 OS=Mus musculus GN=Atp1a2 PE=1 SV=1
 0.0 [9..947] [13..1020]
ATP1A3 - ATPase, Na+/K+ transporting, alpha 3 polypeptide
 0.0 [7..947] [2..1013]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1
 0.0 [2..947] [6..1021]
AT1A3_CHICK - Sodium/potassium-transporting ATPase subunit alpha-3 OS=Gallus gallus GN=ATP1A3 PE=2 SV=1
 0.0 [13..947] [6..1010]
gi|1364218 - gi|1364218|emb|CAA26582.1| unnamed protein product [Ovis aries]
 0.0 [2..947] [1..1016]
gi|14349292 - gi|14349292|dbj|BAB60722.1| Na,K-ATPase alpha subunit 3 [Carassius auratus]
 0.0 [3..947] [6..1022]
AT1A_TETCF - Sodium/potassium-transporting ATPase subunit alpha OS=Tetronarce californica PE=1 SV=1
 0.0 [2..947] [6..1022]

Back

Predicted Domain #1
Region A:
Residues: [1-78] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNPFNASL LDEDSNRERE ILDATAEALS KPSPSLEYCT LSVDEALEKL DTDKNGGLRS  60
   61 SNEANNRRSL YGPNEITV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [151-273] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AECHLMRCGQ ESHVLASTLV PGDLVHFRIG DRIPADIRII EAIDLSIDES NLTGENEPVH  60
   61 KTSQTIEKSS FNDQPNSIVP ISERSCIAYM GTLVKEGHGK GIVVGTGTNT SFGAVFEMMN 120
  121 NIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2130.0
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #2
Region A:
Residues: [79-140] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDDESLFKKF LSNFIEDRMI LLLIGSAVVS LFMGNIDDAV SITLAIFIVV TVGFVQEYRS  60
   61 EK

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [274-338] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKTPLQLTM DKLGKDLSLV SFIVIGMICL VGIIQGRSWL EMFQISVSLA VAAIPEGLPI  60
   61 IVTVT

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [731-950] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFNNIQNFLT FQLSTSVAAL SLVALSTAFK LPNPLNAMQI LWINILMDGP PAQSLGVEPV  60
   61 DHEVMKKPPR KRTDKILTHD VMKRLLTTAA CIIVGTVYIF VKEMAEDGKV TARDTTMTFT 120
  121 CFVFFDMFNA LACRHNTKSI FEIGFFTNKM FNYAVGLSLL GQMCAIYIPF FQSIFKTEKL 180
  181 GISDILLLLL ISSSVFIVDE LRKLWTRKKN EEDSTYFSNV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2130.0
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #3
Region A:
Residues: [141-150] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLEALNKLVP

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [339-378] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LALGVLRMAK RKAIVRRLPS VETLGSVNVI CSDKTGTLTS

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [582-730] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRPNVKFAIE QLLQGGVHII MITGDSENTA VNIAKQIGIP VIDPKLSVLS GDKLDEMSDD  60
   61 QLANVIDHVN IFARATPEHK LNIVRALRKR GDVVAMTGDG VNDAPALKLS DIGVSMGRIG 120
  121 TDVAKEASDM VLTDDDFSTI LTAIEEGKG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2130.0
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #4
Region A:
Residues: [379-581] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHMTVSKLWC LDSMSNKLNV LSLDKNKKTK NSNGNLKNYL TEDVRETLTI GNLCNNASFS  60
   61 QEHAIFLGNP TDVALLEQLA NFEMPDIRNT VQKVQELPFN SKRKLMATKI LNPVDNKCTV 120
  121 YVKGAFERIL EYSTSYLKSK GKKTEKLTEA QKATINECAN SMASEGLRVF GFAKLTLSDS 180
  181 STPLTEDLIK DLTFTGLIGM NDP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2130.0
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle