Protein: | AMS1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1083 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMS1.
Description | E-value | Query Range |
Subject Range |
|
1366.0 | [0..1] | [1083..1] |
|
1105.0 | [0..4] | [1083..8] |
|
1096.0 | [0..10] | [1081..11] |
|
1025.0 | [0..67] | [1081..45] |
|
1024.0 | [0..67] | [1081..45] |
|
1022.0 | [0..1] | [1083..1] |
|
1020.0 | [0..10] | [1081..20] |
|
1019.0 | [0..10] | [1081..20] |
|
1015.0 | [0..41] | [1082..2] |
Region A: Residues: [1-191] |
1 11 21 31 41 51 | | | | | | 1 MSSEDIIYDP QFKPVQGIYE NRLRQFIDTG GDYHDLNLPK FYDKKRISLD HDHVKVWWYQ 60 61 VSFERGSSPV SPDKRPSWKS IIERDKKGEL EFREANINQP FGPSWSTTWF KVKISLPEDW 120 121 VKSNEQLLFQ WDCSNEGIVI DPKTLIPVTA FSGGERTEYV LPKTSDGKHF FYIEAGNNGM 180 181 FGCGAGSTIN P |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [192-680] |
1 11 21 31 41 51 | | | | | | 1 PDDNRFFHLR KADIVWPDLD ARALYIDFWM LGDAARELPG DSWQKHQARQ LGNAVMNLFD 60 61 PNDRSSVRKC RELLQREYFD SFLESSKVYE QGESQVLTNV YGIGNCHIDT AWLWPFAETR 120 121 RKIVRSWSSQ CTLMDRFPEY KFVASQAQQF KWLLEDHPEF FNKVLIPKIQ QSQFFAVGGT 180 181 WVENDTNIPS GESLARQFFF GQRFFLKHFG LKSKIFWLPD TFGYSSQMPQ LCRLSGIDKF 240 241 LTQKLSWNNI NSFPHSTFNW AGIDGSQLLT HMPPGNTYTA DSHFGDVLRT AKQNKTPEYY 300 301 GSGLMLYGKG DGGGGPTEEM LQKMRRIRSM NNRNGNVIPK LQVGITVDEF YDDILKRTNQ 360 361 GHDLPTWSGE LYFEFHRGTY TSQAQTKKLM RLSEIKLHDL EWIAAKTSVL YPDSYKYPSK 420 421 QINELWENVL LCQFHDVLPG SCIEMVYKYE AVPMLHNVVK ECTSLIDKTV QFLQSQSKAD 480 481 LVEMRTLTW |
Detection Method: | ![]() |
Confidence: | 173.9794 |
Match: | 1htyA |
Description: | Golgi alpha-mannosidase II |
Matching Structure (courtesy of the PDB):![]() |
Region A: Residues: [681-966] |
1 11 21 31 41 51 | | | | | | 1 SKPEKVSEEC SLNGSYTSSV TGYDDYIVLA NGKLKVIICK KTGVITSITD ETLGVEYLDT 60 61 EHGRNKLGAN QFVIYDDKPL GWQAWDTELY SVNQYKYVTK PKKVQVSCNT KEKCAVEVIF 120 121 QISEKCKIKS VISLNATAVT DAKLSKVDIS TTVENWDARN KFLKVEFPVN IRNDFASYET 180 181 QFGITKRPTH YNTSWDVAKF EVCHHKFADY SEYSKGVSIL NDCKYGFSTH GNLMRLSLLR 240 241 SPKAPDAHAD MGTHEIKYAI YPHRGALSSD TVKLAHEFNY CFKYKL |
Region A: Residues: [967-1083] |
1 11 21 31 41 51 | | | | | | 1 PKDIGMNFDD IISISGDENV ILSNIKRGED DSAVKSNYSL NPRDEQSIVV RVYESLGGES 60 61 FASLNTTLNL KRIEKVDNLE MKVYKSLTAT RDESNHAINR IPIKLRPFEI ASFRLYF |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.290 | N/A | N/A | b.1.1 | Immunoglobulin |