YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL1A, RPL1B
Organism:	Saccharomyces cerevisiae
Length:	217 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL1A, RPL1B.

Description	E-value	Query Range	Subject Range
gi\|73972666, gi\|... - gi\|73972666\|ref\|XP_532118.2\| PREDICTED: similar to ribosomal protein L10a isoform 1 [Canis familiari... ENSMMUG000000159... - null, null tr\|G1SKZ8\|G1SKZ8... - Ribosomal protein OS=Oryctolagus cuniculus GN=RPL10A PE=3 SV=2 RL10A_BOVIN - 60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3 gi\|61355871, gi\|... - gi\|61355881\|gb\|AAX41186.1\| ribosomal protein L10a [synthetic construct], gi\|61355871\|gb\|AAX41185.1\| ... ENSCJAT00000030456 - null RPL10A - ribosomal protein L10a RL10A_RAT - 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2 tr\|M3WHU6\|M3WHU6... - Ribosomal protein OS=Felis catus GN=RPL10A PE=3 SV=1 gi\|148667795, gi... - gi\|74185403\|dbj\|BAE30175.1\| unnamed protein product [Mus musculus], gi\|74178048\|dbj\|BAE29816.1\| unna...	1.0E-64	[2..217]	[3..217]
RL10A_MOUSE - 60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3	5.0E-64	[2..217]	[3..217]
RL10A_ICTPU - 60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1	1.0E-63	[1..217]	[1..216]
R10A3_ARATH - 60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1	2.0E-61	[1..217]	[1..217]
RL10A_SPOFR - 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1	4.0E-61	[2..217]	[3..217]
rpl-1 - status:Confirmed UniProt:Q9N4I4 protein_id:AAF36008.1	1.0E-60	[1..217]	[1..216]
RL1A_SCHPO - 60S ribosomal protein L1-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl102 PE=1 SV=... rpl102 - 60S ribosomal protein L10a	2.0E-59	[1..217]	[1..216]
RL1A_YEAST, RL1B... - 60S ribosomal protein L1-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL1B PE=1 SV... gi\|207345421 - gi\|207345421\|gb\|EDZ72248.1\| YGL135Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407743, gi... - gi\|190407743\|gb\|EDV11008.1\| ribosomal protein L1B [Saccharomyces cerevisiae RM11-1a], gi\|190407084\|g... RPL1A, RPL1B - N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ... gi\|151942581, gi... - gi\|151943676\|gb\|EDN61986.1\| ribosomal protein L1B [Saccharomyces cerevisiae YJM789], gi\|151942581\|gb...	6.0E-59	[1..217]	[1..217]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKITSSQVR EHVKELLKYS NETKKRNFLE TVELQVGLKN YDPQRDKRFS GSLKLPNCPR  60
   61 PN

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [153-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STIKFQLKKV LCLAVAVGNV EMEEDVLVNQ ILMSVNFFVS LLKKNWQNVG SLVVKSSMGP  60
   61 AFRLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1117.0
Match:	1k5yA_
Description:	No description for 1k5yA_ was found.

Predicted Domain #2

Region A:
Residues: [63-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSICIFGDAF DVDRAKSCGV DAMSVDDLKK LNKNKKLIKK LSKKYNAFIA SEVLIKQVPR  60
   61 LLGPQLSKAG KFPTPVSHND DLYGKVTDVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1117.0
Match:	1k5yA_
Description:	No description for 1k5yA_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits