| Protein: | PCL10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 433 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCL10.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..433] | [1..433] |
|
|
1.0E-65 | [137..430] | [164..445] |
|
|
7.0E-52 | [250..430] | [2..174] |
|
|
6.0E-51 | [271..429] | [71..221] |
|
Region A: Residues: [1-206] |
1 11 21 31 41 51
| | | | | |
1 MDMTKNHTTD TEEFDDGDIR PVSLGIVDDY NASFELPLKP KFLQSENFSD LTSEWDQSRS 60
61 NTPGLAEGKT EKAQPCGTTD SSKNRIHVEQ LLESANEMNN YLAQNIENIN NFQVGLLNGG 120
121 KGLYSSMGDD SSACINGTNF SSTSNFELSD DELEDTTGCT SSIFDKDLFH QQNGLSIPRR 180
181 RSPLFKSPTA SFEIGDATDV EEQDID
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [207-433] |
1 11 21 31 41 51
| | | | | |
1 DSIFSECSSI TSFDMGGLHI SLPHDEEEDQ EKTKSESENP LLHGIPVDVE VPHISVDEAL 60
61 ANFKETIELL LKLSGNRKCT GFNTRVEKKE YSNFYMKSKP TLSSADFLKR IQDKCEYQPT 120
121 VYLVATFLID TLFLTRDGNN ILQLKLNLQE KEVHRMIIAA VRLSTKLLED FVHSHEYFSK 180
181 VCGISKRLLT KLEVSLLICV CNTKLMVSNR KLAASKLLLN ELRSFCV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [303-433] |
1 11 21 31 41 51
| | | | | |
1 KSKPTLSSAD FLKRIQDKCE YQPTVYLVAT FLIDTLFLTR DGNNILQLKL NLQEKEVHRM 60
61 IIAAVRLSTK LLEDFVHSHE YFSKVCGISK RLLTKLEVSL LICVCNTKLM VSNRKLAASK 120
121 LLLNELRSFC V
|
| Detection Method: | |
| Confidence: | 0.985 |
| Match: | 1d3uB |
| Description: | Transcription factor IIB (TFIIB), core domain |
Matching Structure (courtesy of the PDB): |
|
