YRC Public Data Repository - Protein Structure Prediction

Protein:	SOH1
Organism:	Saccharomyces cerevisiae
Length:	127 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOH1.

Description	E-value	Query Range	Subject Range
MED31_CANGA - Mediator of RNA polymerase II transcription subunit 31 OS=Candida glabrata GN=SOH1 PE=3 SV=1 MED31_CANGA - Mediator of RNA polymerase II transcription subunit 31 OS=Candida glabrata (strain ATCC 2001 / CBS 1...	167.0	[0..13]	[127..15]
MED31_ASHGO - Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya gossypii (strain ATCC 10895 / CBS 1... MED31_ASHGO - Mediator of RNA polymerase II transcription subunit 31 OS=Ashbya gossypii GN=SOH1 PE=3 SV=1	165.0	[0..1]	[125..1]
MED31_ENCCU - Mediator of RNA polymerase II transcription subunit 31 OS=Encephalitozoon cuniculi (strain GB-M1) GN... MED31_ENCCU - Mediator of RNA polymerase II transcription subunit 31 OS=Encephalitozoon cuniculi GN=SOH1 PE=3 SV=1	154.0	[0..21]	[125..4]
gi\|115483476, gi... - gi\|78709017\|gb\|ABB47992.1\| mediator complex subunit SOH1, putative, expressed [Oryza sativa (japonic...	144.0	[0..10]	[109..5]
MED31_KLULA - Mediator of RNA polymerase II transcription subunit 31 OS=Kluyveromyces lactis GN=SOH1 PE=3 SV=1 MED31_KLULA - Mediator of RNA polymerase II transcription subunit 31 OS=Kluyveromyces lactis (strain ATCC 8585 / C...	144.0	[0..15]	[125..12]
MED31_ARATH - Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=MED31 PE=1 SV=1	127.0	[0..7]	[89..10]
gi\|125776368, gi... - gi\|54638997\|gb\|EAL28399.1\| GA14867-PA [Drosophila pseudoobscura], gi\|125776368\|ref\|XP_001359254.1\| G...	126.0	[0..22]	[88..19]
gi\|220944342, gi... - gi\|220954132\|gb\|ACL89609.1\| MED31-PA [synthetic construct], gi\|220944342\|gb\|ACL84714.1\| MED31-PA [sy... FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...	123.0	[0..22]	[88..21]
MED31_MOUSE - Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2	123.0	[0..8]	[107..4]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTNGNAPA TPSSDQNPLP TRFEVELEFI QSLANIQYVT YLLTQQQIWK SPNFKNYLKY  60
   61 LEYWCNPPYS QCIVYPNCLF ILKLLNGFME SAIVNEDGLL EGLDELPKII QLQGPQWMNE 120
  121 MVERWAN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.0
Match:	PF05669.3
Description:	No description for PF05669.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits