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View Structure Prediction Details

Protein: RPS2
Organism: Saccharomyces cerevisiae
Length: 254 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS2.

Description E-value Query
Range
Subject
Range
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1
0.0 [10..253] [20..264]
gi|2920833 - gi|2920833|gb|AAC04625.1| ribosomal protein S2 [Rattus norvegicus]
0.0 [24..253] [6..236]
RS2_MOUSE - 40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3
gi|57718 - gi|57718|emb|CAA40679.1| ribosomal protein S2 [Rattus rattus]
gi|55249864 - gb|AAH86024.1| Unknown (protein for MGC:98099) [Xenopus laevis]
gi|223975107 - gi|223975107|gb|ACN31741.1| unknown [Zea mays]
RS2_RAT - 40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1
0.0 [3..253] [28..279]
RS2_BOVIN - (O18789) 40S ribosomal protein S2 (Fragment)
0.0 [3..253] [21..272]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-95 [48..253] [1..207]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPEAQQQK RGGFGGRNRG RPNRRGPRNT EEKGWVPVTK LGRLVKAGKI TTIEEIFLHS  60
   61 L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [62-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVKEFQIIDT LLPGLQDEVM NIKPVQKQTR AGQRTRFKAV VVVGDSNGHV GLGIKTAKEV  60
   61 AGAIRAGIII AKLSVIPIRR GYWGTNLGQP HSLATKTTGK CGSVTVRLIP APRGSGIVAS 120
  121 PAVKKLLQLA GVEDVYTQSN GKTRTLENTL KAAFVAIGNT YGFLTPNLWA EQPLPVSPLD 180
  181 IYSDEASAQK KRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 783.68867
Match: 1k5xE_
Description: No description for 1k5xE_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle