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View Structure Prediction Details

Protein: NAB2
Organism: Saccharomyces cerevisiae
Length: 525 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAB2.

Description E-value Query
Range
Subject
Range
NAB2_YEAST - Nuclear polyadenylated RNA-binding protein NAB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
NAB2 - Nuclear polyadenylated RNA-binding protein required for nuclear mRNA export and poly(A) tail length ...
0.0 [1..525] [1..525]
gi|13516492, gi|... - gi|20302129|ref|NP_620275.1| zinc finger CCCH-type containing 14 isoform 2 [Rattus norvegicus], gi|1...
7.0E-84 [122..406] [336..601]
gi|19353657 - gi|19353657|gb|AAH24856.1| Zc3h14 protein [Mus musculus]
2.0E-79 [122..406] [59..323]
gi|15451273, gi|... - gi|67970154|dbj|BAE01421.1| unnamed protein product [Macaca fascicularis], gi|15451273|dbj|BAB64440....
2.0E-63 [165..406] [204..434]
gi|18997095 - gi|18997095|gb|AAL83289.1|AF474376_1 putative NY-REN-37 antigen [Homo sapiens]
6.0E-55 [213..406] [104..276]
gi|15828677 - gi|15828677|ref|NP_326037.1| lipoprotein [Mycoplasma pulmonis UAB CTIP]
gi|14089619, gi|... - pir||F90537 lipoprotein [imported] - Mycoplasma pulmonis (strain UAB CTIP), gi|14089619|emb|CAC13379...
2.0E-37 [28..255] [7..226]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQEQYTENL KVIVAEKLAG IPNFNEDIKY VAEYIVLLIV NGGTVESVVD ELASLFDSVS  60
   61 RDTLANVVQT AFFALEALQQ GESAENIVSK IRMMNAQSLG QSDIAQQQQQ QQQQQQPDIA 120
  121 QQQPQQQPQQ QPQQQPQQQP QQQPQQQPQQ QPQQQPQLQP LQPQLGTQNA MQTDAPATPS 180
  181 PISAFSGVVN AAAPPQFAPV DNSQRFTQRG GGAVGKNRRG GRGGNRGGRN NNSTRFN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 14.87
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [238-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLAKALGMAG ESNMNFTPTK KEGRCRLFPH CPLGRSCPHA HPTKVCNEYP NCPKPPGTCE  60
   61 FLHPNEDEEL MKEMERTREE FQKRKADLLA AKRKPVQTGI VLCKFGALCS NPSCPFGHPT 120
  121 PANEDAKVID LMWCDKNLTC DNPECRKAHS SLSKIKEVKP ISQKKAAPPP VEKSLEQCKF 180
  181 GTHCTNKRCK YRHARSHIMC REGANCTRID CLFGHPINED CRFGVNCKNI YCLFRHPPGR 240
  241 VLPEKKGAAP NSNVPTNERP FALPENAIIE NAPPQTSFTH QEQDTEMN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.66
Match: 1jv2B
Description: Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle