| Protein: | LSG1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 640 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSG1.
| Description | E-value | Query Range |
Subject Range |
|
|
385.0 | [0..1] | [616..1] |
|
|
370.0 | [0..20] | [616..20] |
|
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364.0 | [0..1] | [611..1] |
|
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339.0 | [0..22] | [634..5] |
|
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334.0 | [0..21] | [622..4] |
|
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325.0 | [0..26] | [614..6] |
|
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325.0 | [0..7] | [612..15] |
|
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321.0 | [0..10] | [634..12] |
|
|
308.0 | [0..1] | [617..9] |
|
|
306.0 | [0..11] | [557..16] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MPPKEAPKKW KAPKGPKPTH RKNKNKLELG RAIKYARQKE NAIEYLPDGE MRFTTDKHEA 60
61 NWVKLRSVTQ ESALDEFLST AALADKDFTA DRHSNVKIIR MD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.354 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.310 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.247 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.240 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.229 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.229 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.211 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.206 | N/A | N/A | a.25.1 | Ferritin-like |
|
Region A: Residues: [103-321] |
1 11 21 31 41 51
| | | | | |
1 SGNDSATSQG FSMTNEQRGN LNAKQRALAK DLIVPRRPEW NEGMSKFQLD RQEKEAFLEW 60
61 RRKLAHLQES NEDLLLTPFE RNIEVWKQLW RVVERSDLVV QIVDARNPLL FRSVDLERYV 120
121 KESDDRKANL LLVNKADLLT KKQRIAWAKY FISKNISFTF YSALRANQLL EKQKEMGEDY 180
181 REQDFEEADK EGFDADEKVM EKVKILSIDQ LEELFLSKA
|
| Detection Method: | |
| Confidence: | 2.522879 |
| Match: | 1g7rA |
| Description: | Initiation factor IF2/eIF5b, domains 2 and 4; Initiation factor IF2/eIF5b, domain 3; Initiation factor IF2/eIF5b, N-terminal (G) domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [322-512] |
1 11 21 31 41 51
| | | | | |
1 PNEPLLPPLP GQPPLINIGL VGYPNVGKSS TINSLVGAKK VSVSSTPGKT KHFQTIKLSD 60
61 SVMLCDCPGL VFPNFAYNKG ELVCNGVLPI DQLRDYIGPA GLVAERIPKY YIEAIYGIHI 120
121 QTKSRDEGGN GDIPTAQELL VAYARARGYM TQGYGSADEP RASRYILKDY VNGKLLYVNP 180
181 PPHLEDDTPY T
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 1egaA |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [513-640] |
1 11 21 31 41 51
| | | | | |
1 REECEEFNKD LYVFDRLPDT RKEQVQNAAK AKGIDIVDLA RDLNQLTFSA HTGGDTQKEA 60
61 KSVTHGGKQA ALYNAAEDLD RDFFKMNNVE GRLSTPFHKV QNSSAGKRHN KKNKSKNAKS 120
121 KVFSIENN
|
| Detection Method: | |
| Confidence: | 41.0 |
| Match: | 1egaA |
| Description: | GTPase Era, N-terminal domain; GTPase Era C-terminal domain |
| Matching Structure (courtesy of the PDB): |
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