| Protein: | LIF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 421 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIF1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..421] | [1..421] |
|
Region A: Residues: [1-421] |
1 11 21 31 41 51
| | | | | |
1 MSQLTEFISC IPVVNEEQNE EDERGLCKIQ IEDGAMLETL DENSLSGLRI EKMLVSEGTG 60
61 IFSKSSFGIN DLRIFTGENI DEESKKYVWY ELLKMLTGHK VYIASLDEKV VFTKWTCRMQ 120
121 DDEVWKVVME LESSAIIRKI AELTLHPVKK GEIDLFEMAD KLYKDICCVN DSYRNIKESD 180
181 SSNRNRVEQL ARERELLDKL LETRDERTRA MMVTLLNEKK KKIRELHEIL RQNNIKLSDD 240
241 DVLDSALINT EVQKPISELN SPGKRMKRRK TVVEPQNLQK KLKDTSRRRA NRKISNQSVI 300
301 KMEDDDFDDF QFFGLSKRPI ITAKDKLSEK YDDITSFGDD TQSISFESDS SSDVQKHLVS 360
361 LEDNGIQISA GRSDEDYGDI SGSESETDAS AGEKKSSNHS EQSGNDREPC LQTESETDIE 420
421 T
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [260-421] |
1 11 21 31 41 51
| | | | | |
1 NSPGKRMKRR KTVVEPQNLQ KKLKDTSRRR ANRKISNQSV IKMEDDDFDD FQFFGLSKRP 60
61 IITAKDKLSE KYDDITSFGD DTQSISFESD SSSDVQKHLV SLEDNGIQIS AGRSDEDYGD 120
121 ISGSESETDA SAGEKKSSNH SEQSGNDREP CLQTESETDI ET
|
| Detection Method: | |
| Confidence: | 38.0 |
| Match: | PF08607.1 |
| Description: | No description for PF08607.1 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
