YRC Public Data Repository - Protein Structure Prediction

Protein:	MF(ALPHA)2
Organism:	Saccharomyces cerevisiae
Length:	120 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MF(ALPHA)2.

Description	E-value	Query Range	Subject Range
MFA1_SACBA - Mating factor alpha OS=Saccharomyces bayanus PE=4 SV=1 MFA1_SACUV - Mating factor alpha OS=Saccharomyces uvarum PE=4 SV=1	213.0	[0..1]	[120..1]
gi\|127054, gi\|171945 - gi\|171945\|gb\|AAA34778.1\| mating factor alpha, sp\|P25041\|MFAI_YEAST Mating factor alpha precursor (Al...	210.0	[0..1]	[120..1]
MFAP_LACKL - Mating factor alpha OS=Lachancea kluyveri PE=4 SV=1	199.0	[0..4]	[120..7]
gi\|24940430 - gi\|24940430\|emb\|CAD56314.1\| alpha-pheromone [Saccharomyces paradoxus]	187.0	[0..16]	[120..21]
gi\|29468347 - gi\|29468347\|gb\|AAO85513.1\| protein C activator [synthetic construct]	146.0	[0..1]	[85..1]

Back

Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFISTFLTF ILAAVSVTAS SDEDIAQVPA EAIIGYLDFG GDHDIAFLPF SNATASGLLF  60
   61 INTTIAEAAE KEQNTTLAKR EAVADAWHWL NLRPGQPMYK REANADAWHW LQLKPGQPMY 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.585027
Match:	PF05436.2
Description:	No description for PF05436.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits