YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YGL088W
Organism: Saccharomyces cerevisiae
Length: 121 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGL088W.

Description E-value Query
Range
Subject
Range
gi|1945294 - gi|1945294|emb|CAA96793.1| unnamed protein product [Saccharomyces cerevisiae]
5.0E-32 [51..121] [1..71]

Back

Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEVTRTYYF FLFFFLSYKR QINAAFIALF DFPLLFIYFP FLILVLFYNS NANLTAIRNT  60
   61 YSISSRLNPS GAFLTHEECG LVLQYIYYWL GLENKFIDLG CNSLSVVCFL ADLRVYLRVP 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.587 a.118.8 TPR-like
View Download 0.587 a.118.8 TPR-like
View Download 0.573 a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.573 a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.521 a.1.1 Globin-like
View Download 0.521 a.1.1 Globin-like
View Download 0.479 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.479 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.449 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.449 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.420 a.118.18 Cysteine rich protein B (HcpB)
View Download 0.405 d.218.1 Nucleotidyltransferase
View Download 0.405 a.7.8 GAT domain
View Download 0.404 a.60.10 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
View Download 0.401 a.1.1 Globin-like
View Download 0.391 a.74.1 Cyclin-like
View Download 0.368 a.118.9 ENTH/VHS domain
View Download 0.360 d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
View Download 0.351 f.14.1 Voltage-gated potassium channels
View Download 0.349 a.95.1 Influenza virus matrix protein M1
View Download 0.306 c.84.1 Phosphoglucomutase, first 3 domains
View Download 0.300 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.300 d.95.2 Homing endonucleases
View Download 0.299 a.19.1 Fertilization protein
View Download 0.293 a.85.1 Hemocyanin, N-terminal domain
View Download 0.282 d.8.1 Urease, gamma-subunit
View Download 0.281 a.4.5 "Winged helix" DNA-binding domain
View Download 0.279 d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
View Download 0.273 a.7.6 Ribosomal protein S20
View Download 0.265 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.263 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.252 a.1.1 Globin-like
View Download 0.246 a.71.1 Endoplasmic reticulum protein ERP29, C-domain
View Download 0.243 a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.227 d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.227 d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
View Download 0.225 a.61.1 Retroviral matrix proteins
View Download 0.213 a.4.12 TrpR-like
View Download 0.209 a.131.1 Peridinin-chlorophyll protein
View Download 0.209 a.1.1 Globin-like
View Download 0.202 d.26.1 FKBP-like
View Download 0.202 d.79.5 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle