YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP37
Organism:	Saccharomyces cerevisiae
Length:	130 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP37.

Description	E-value	Query Range	Subject Range
MPC1_SCHPO - Probable mitochondrial pyruvate carrier 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=... SPCC1235.11 - conserved eukaryotic protein	174.0	[0..1]	[126..7]
gi\|74215259 - gi\|74215259\|dbj\|BAE41851.1\| unnamed protein product [Mus musculus]	168.0	[0..8]	[109..4]
gi\|148235923, gi... - gi\|56541218\|gb\|AAH87474.1\| LOC496160 protein [Xenopus laevis], gi\|148235923\|ref\|NP_001088849.1\| hypo...	168.0	[0..10]	[115..6]
gi\|4929727 - gi\|4929727\|gb\|AAD34124.1\|AF151887_1 CGI-129 protein [Homo sapiens]	166.0	[0..8]	[111..4]
gi\|114610222 - gi\|114610222\|ref\|XP_001137474.1\| PREDICTED: brain protein 44-like [Pan troglodytes]	166.0	[0..8]	[111..4]
MPC1_BOVIN - Mitochondrial pyruvate carrier 1 OS=Bos taurus GN=MPC1 PE=1 SV=1	166.0	[0..8]	[111..4]
gi\|50289017, gi\|... - gi\|50289017\|ref\|XP_446938.1\| unnamed protein product [Candida glabrata], gi\|49526247\|emb\|CAG59871.1\|... gi\|49526247 - gi\|49526247\|emb\|CAG59871.1\| unnamed protein product [Candida glabrata]	166.0	[0..1]	[130..1]
gi\|53134979 - gi\|53134979\|emb\|CAG32383.1\| hypothetical protein [Gallus gallus]	165.0	[0..8]	[110..4]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPVQRAAA RSFLQKYINK ETLKYIFTTH FWGPVSNFGI PIAAIYDLKK DPTLISGPMT  60
   61 FALVTYSGVF MKYALSVSPK NYLLFGCHLI NETAQLAQGY RFLKYTYFTT DEEKKALDKE 120
  121 WKEKEKTGKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.337242
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.857	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.857	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.787	N/A	N/A	a.7.7	BAG domain
View	Download	0.728	N/A	N/A	a.24.18	Description not found.
View	Download	0.674	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.674	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.615	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.615	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.609	N/A	N/A	a.204.1	Description not found.
View	Download	0.563	N/A	N/A	a.62.1	Hepatitis B viral capsid (hbcag)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits