YRC Public Data Repository - Protein Structure Prediction

Protein:	MNP1
Organism:	Saccharomyces cerevisiae
Length:	194 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MNP1.

Description	E-value	Query Range	Subject Range
gi\|54035364, gi\|... - gb\|AAH86163.1\| Unknown (protein for MGC:98601) [Xenopus laevis], gb\|AAH83969.1\| Unknown (protein fo... RM12_MOUSE - 39S ribosomal protein L12, mitochondrial OS=Mus musculus GN=Mrpl12 PE=1 SV=2	4.0E-39	[1..194]	[15..201]
MNP1 - Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with si... MNP1_YEAST - 54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943736 - gi\|151943736\|gb\|EDN62046.1\| mitochondrial-nucleoid protein [Saccharomyces cerevisiae YJM789] gi\|190407028 - gi\|190407028\|gb\|EDV10295.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207345332 - gi\|207345332\|gb\|EDZ72188.1\| YGL068Wp-like protein [Saccharomyces cerevisiae AWRI1631]	1.0E-37	[1..194]	[1..194]
RK122_ARATH - 50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=3 SV=2	1.0E-34	[5..193]	[12..192]
RK12_SPIOL - 50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2	3.0E-34	[1..193]	[10..188]
RM12_CRICR - 39S ribosomal protein L12, mitochondrial OS=Cricetus cricetus GN=MRPL12 PE=2 SV=1	7.0E-32	[1..194]	[16..203]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRILAKRS SSIWMKTRVT PALISPITIT TRFNSTTTTA PSHKDDVRPV DPKISKIVQD  60
   61 ISQLTLLETS SLINELKTVL NIPEISMPMG GFMAGAAGAG AGNVPSSTGE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [111-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGSGAEEEAK PEAKTVFTVK LDSFDTKTKA KVIKEVKGLL GLSLVEAKKF VEAAPKVLKE  60
   61 NVAKDDAEKI KKTLEDLGAK VSLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.232149
Match:	1ctf__
Description:	Ribosomal protein L7/12, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits