YRC Public Data Repository - Protein Structure Prediction

Protein:	DUO1
Organism:	Saccharomyces cerevisiae
Length:	247 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DUO1.

Description	E-value	Query Range	Subject Range
DUO1 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced... DUO1_YEAST - DASH complex subunit DUO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUO1 PE=1 SV=1	0.0	[1..247]	[1..247]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQSQLDDS TIDKLIPQIF NEMRSNLNNT TNKFPKSTGG GASDNISANS NSIRSFNSIT  60
   61 TQSLLKESES LDKITAMIKN VTAALKNNLP VYVNQVHEVC KSTNSILDSW INIHSQAGYI 120
  121 HKLMSDQTYL KLINDRLHNE NVNTNDEDGS TLHNVIALKK KEILDLRQKL ENRKGEKDAA 180
  181 PAKPPNQGLN PRYGVQSGRR PVPSAGISNN GRVRKTHVPA SKRPSGIPRV TNRWTKPTAS 240
  241 SSRKMFR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEKDAAPAKP PNQGLNPRYG VQSGRRPVPS AGISNNGRVR KTHVPASKRP SGIPRVTNRW  60
   61 TKPTASSSRK MFR