YRC Public Data Repository - Protein Structure Prediction

Protein:	ERV14
Organism:	Saccharomyces cerevisiae
Length:	138 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERV14.

Description	E-value	Query Range	Subject Range
gi\|109105438 - gi\|109105438\|ref\|XP_001118044.1\| PREDICTED: similar to cornichon homolog 2 [Macaca mulatta]	175.0	[0..11]	[132..147]
gi\|113422964 - gi\|113422964\|ref\|XP_001129488.1\| PREDICTED: similar to cornichon homolog 2 [Homo sapiens]	166.0	[0..23]	[132..201]
CNIH4_ARATH - Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1	162.0	[0..4]	[136..5]
gi\|74181821 - gi\|74181821\|dbj\|BAE32615.1\| unnamed protein product [Mus musculus]	162.0	[0..3]	[133..7]
gi\|224051950, gi... - gi\|224051950\|ref\|XP_002200654.1\| PREDICTED: putative cornichon-like [Taeniopygia guttata], gi\|197127... gi\|73759939, gi\|... - gi\|74136747\|ref\|NP_001028178.1\| cornichon-like [Gallus gallus], gi\|73759939\|dbj\|BAE20187.1\| cornicho...	155.0	[0..3]	[133..7]
gi\|56118470, gi\|... - gi\|89269111\|emb\|CAJ81847.1\| cornichon homolog (Drosophila) [Xenopus tropicalis], gi\|56118470\|ref\|NP_...	155.0	[0..3]	[133..7]
gi\|13195570 - gi\|13195570\|gb\|AAK15762.1\|AF329820_1 cornichon [Boltenia villosa]	154.0	[0..3]	[132..7]
gi\|148224474, gi... - gi\|51513022\|gb\|AAH80391.1\| MGC82102 protein [Xenopus laevis], gi\|148224474\|ref\|NP_001087588.1\| MGC82...	154.0	[0..3]	[133..7]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAWLFILAV VVNCINLFGQ VHFTILYADL EADYINPIEL CSKVNKLITP EAALHGALSL  60
   61 LFLLNGYWFV FLLNLPVLAY NLNKIYNKVQ LLDATEIFRT LGKHKRESFL KLGFHLLMFF 120
  121 FYLYRMIMAL IAESGDDF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.920819
Match:	PF03311.5
Description:	No description for PF03311.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.964	N/A	N/A	f.17.1	F1F0 ATP synthase subunit C

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits