YRC Public Data Repository - Protein Structure Prediction

Protein:	RPT6
Organism:	Saccharomyces cerevisiae
Length:	405 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPT6.

Description	E-value	Query Range	Subject Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	0.0	[1..403]	[320..723]
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	0.0	[1..404]	[317..710]
gi\|5106179, gi\|1... - gi\|5106179\|dbj\|BAA81490.1\| 699aa long hypothetical transitional endoplasmic reticulum ATPase [Aeropy... gi\|7435761 - pir\|\|B72479 probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1...	0.0	[1..404]	[288..679]
gi\|15920392, gi\|... - gi\|15920392\|ref\|NP_376061.1\| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7], gi\|15621174\|d...	0.0	[1..404]	[250..670]
gi\|2245467 - gi\|2245467\|gb\|AAC48284.1\| DUG [Drosophila melanogaster]	0.0	[3..405]	[1..405]
gi\|13813572, gi\|... - gi\|15897351\|ref\|NP_341956.1\| AAA ATPase family protein [Sulfolobus solfataricus P2], gi\|13813572\|gb\|... gi\|25289959 - pir\|\|C90186 AAA family ATPase [imported] - Sulfolobus solfataricus	0.0	[1..402]	[339..757]
PRS8_MANSE - 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1	0.0	[10..405]	[7..402]
gi\|7435751 - pir\|\|A69086 cell division control protein Cdc48 - Methanobacterium thermoautotrophicum (strain Delta... gi\|15679634, gi\|... - gi\|2622767\|gb\|AAB86112.1\| cell division control protein Cdc48 [Methanothermobacter thermautotrophicu...	0.0	[1..392]	[343..722]
YB56_METJA, Y115... - (Q58556) Cell division cycle protein 48 homolog MJ1156, Cell division cycle protein 48 homolog MJ115... Y1156_METJA - Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / ...	0.0	[1..372]	[317..674]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAVTSSNI VLETHESGIK PYFEQKIQET ELKIRSKTEN VRRLEAQRNA LNDKVRFIKD  60
   61 ELRLLQEPGS YVGEVIKIVS DKKVLVKVQP EGKYIVDVAK DINVKDLKAS QRVCLRSDSY 120
  121 MLHKVLENKA DPLVSLMMVE KVPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	607.373389
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [145-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STYDMVGGLT KQIKEIKEVI ELPVKHPELF ESLGIAQPKG VILYGPPGTG KTLLARAVAH  60
   61 HTDCKFIRVS GAELVQKYIG EGSRMVRELF VMAREHAPSI IFMDEIDSIG STRVEGSGGG 120
  121 DSEVQRTMLE LLNQLDGFET SKNIKIIMAT NRLDILDPAL LRPGRIDRKI EFPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	607.373389
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [319-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVAARAEIL RIHSRKMNLT RGINLRKVAE KMNGCSGADV KGVCTEAGMY ALRERRIHVT  60
   61 QEDFELAVGK VMNKNQETAI SVAKLFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	607.373389
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits