YRC Public Data Repository - Protein Structure Prediction

Protein:	RIM8
Organism:	Saccharomyces cerevisiae
Length:	229 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM8.

Description	E-value	Query Range	Subject Range
PALF_YEAST - pH-response regulator protein palF/RIM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... RIM8 - Protein involved in proteolytic activation of Rim101p in response to alkaline pH; interacts with ESC...	8.0E-97	[2..229]	[315..542]
PALF_EMENI - pH-response regulator protein palF/RIM8 OS=Emericella nidulans GN=palF PE=2 SV=1 PALF_EMENI - pH-response regulator protein palF/RIM8 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11...	9.0E-67	[7..227]	[399..640]
gi\|5802570 - gi\|5802570\|gb\|AAD51715.1\|AF173842_1 Rim8p [Candida albicans]	1.0E-62	[4..228]	[322..557]
PALF_YARLI - pH-response regulator protein palF/RIM8 OS=Yarrowia lipolytica GN=RIM8 PE=3 SV=1 PALF_YARLI - pH-response regulator protein palF/RIM8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RIM8 PE=...	3.0E-24	[2..182]	[416..552]

Back

Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPMETFRKD ICQSISPIYI NPETLQFQSR VYLKVPLDAF STLTTVGKFF SFQYYIEVMV  60
   61 NLSKKNVVYT ESNRIIGTPI GEQNGLGVEN NINRIQRKML RMVNPETLEN DSEGYESSIF 120
  121 FKDMVNVEKL KRLRNVTGMS IETVIGTTRS EQQQSDASIP SQSSITAPQN SPSNLRDWLA 180
  181 PLNAYDSDDV PVPKYSPNDK VSVPSEDKQE LEQKRLQQLE SDPPPCDDY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits