YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DST1
Organism: Saccharomyces cerevisiae
Length: 309 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DST1.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-87 [5..308] [4..300]
gi|109086405 - gi|109086405|ref|XP_001082935.1| PREDICTED: transcription elongation factor A 1 isoform 2 [Macaca mu...
gi|61355862 - gi|61355862|gb|AAX41184.1| transcription elongation factor A 1 [synthetic construct]
TCEA1 - transcription elongation factor A (SII), 1
2.0E-87 [5..308] [4..300]
TCEA2_MOUSE - Transcription elongation factor A protein 2 OS=Mus musculus GN=Tcea2 PE=2 SV=2
4.0E-87 [4..308] [5..298]
gi|1325970, gi|1... - gi|50414699|gb|AAH77765.1| XTFIIS.oB protein [Xenopus laevis], gi|147905221|ref|NP_001081593.1| TFII...
4.0E-86 [5..308] [7..302]
TCEA2_RAT - Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1
gi|712842 - gi|712842|dbj|BAA02310.1| transcription elongation factor S-II [Rattus sp.]
6.0E-86 [4..308] [5..298]
gi|171424, gi|172773 - gi|172773|gb|AAA88734.1| DNA strand transferase alpha [Saccharomyces cerevisiae], gi|171424|gb|AAA34...
1.0E-84 [1..309] [1..309]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKEVLVHV KNLEKNKSND AAVLEILHVL DKEFVPTEKL LRETKVGVEV NKFKKSTNVE  60
   61 ISKLVKKMIS SWKDAINKNK RSRQAQQHHQ DHAPGNAEDK TTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 330.502279
Match: 1eo0A_
Description: Transcription elongation factor TFIIS N-domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [104-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GESVNGVQQP ASSQSDAMKQ DKYVSTKPRN SKNDGVDTAI YHHKLRDQVL KALYDVLAKE  60
   61 SEHPPQSILH TAKAIESEMN KVNNCDT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 574.66807
Match: 1enwA_
Description: Elongation factor TFIIS domain 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [191-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEAAYKARYR IIYSNVISKN NPDLKHKIAN GDITPEFLAT CDAKDLAPAP LKQKIEEIAK  60
   61 QNLYNAQG

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.27
Match: 1enwA
Description: Elongation factor TFIIS domain 2
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [259-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATIERSVTDR FTCGKCKEKK VSYYQLQTRS ADEPLTTFCT CEACGNRWKF S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 155.08661
Match: 1tfi__
Description: Transcriptional factor SII, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle