YRC Public Data Repository - Protein Structure Prediction

Protein:	YGL036W
Organism:	Saccharomyces cerevisiae
Length:	909 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGL036W.

Description	E-value	Query Range	Subject Range
gi\|1945291 - gi\|1945291\|emb\|CAA96737.1\| MTC2 [Saccharomyces cerevisiae]	675.0	[0..557]	[909..1]
gi\|44985060 - gi\|44985060\|gb\|AAS53838.1\| AFR467Wp [Ashbya gossypii ATCC 10895] gi\|44985060, gi\|... - gi\|45198985\|ref\|NP_986014.1\| AFR467Wp [Ashbya gossypii ATCC 10895], gi\|44985060\|gb\|AAS53838.1\| AFR46...	332.0	[0..24]	[905..14]
gi\|50312087, gi\|... - gi\|50312087\|ref\|XP_456075.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645211\|emb\|CAG9878... gi\|49645211 - gi\|49645211\|emb\|CAG98783.1\| KLLA0F22275p [Kluyveromyces lactis]	253.0	[0..99]	[905..80]
gi\|49524141 - gi\|49524141\|emb\|CAG57732.1\| unnamed protein product [Candida glabrata] gi\|50284823, gi\|... - gi\|50284823\|ref\|XP_444839.1\| hypothetical protein CAGL0A01694g [Candida glabrata CBS138], gi\|4952414...	196.0	[0..201]	[748..121]

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Predicted Domain #1

Region A:
Residues: [1-600]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKCAGHAPL VTAASRVSQD TVDALLQAIL KAYHKLASID SHINDPVEIA FKLINSFKYL  60
   61 PISGSSVKDF ESELRELDVF SPLLQSAVTA ANNSNIIWDL IAVLFAYISI HKQLHPLILH 120
  121 NLNIWKDFMA DNDEETATTT DGDSMNFGVL SLLSIVQNFE EITPNLFEFL KLGLRSTLLK 180
  181 IWVAQWQRYD PSATNLINGD EKISSWITKD YQVDFFIITS LASTSSLEVL PSHYFVYKIS 240
  241 KRISHFPNLI DPKLYRSAIS TIMENGISDN GGGENSSDKI DPTDLSFHLQ VLMEVIDHPE 300
  301 LNYLQENRLI LLLDIALNYL ILVPTHCLHS NFGELGSTQS LASTLNIIQF LLSKFLINMG 360
  361 SISQLINQYN RKCITTNNIN NNNINNNGVI NGSTNTTSTT TTTITNNNNN SNNSSISNNN 420
  421 RKIDWTQSYQ TRYQIPYWFE DSILPPIPPI SKSLFTFDKN LDHESDSIMI VNDVLRCLNL 480
  481 TILLISKLLR DYDDLKINPL IQSSDDHSNE DNHVIIEQYM QLYLVPLFTS LLLAQQLKDR 540
  541 GQERDEGHKE KEENINLIGS SSVKKLFSQL IFFSSLKLCE NLVIKEKNLA LYHLIKFATK 600
  601

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	9.53
Match:
Description:	No description for 1ej6B was found.

Predicted Domain #2

Region A:
Residues: [601-657]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSLDDLILQK ISINLLNHLF FHQIRDGSDD DNLIKKLCLK NQLSFQALKD YITLWND

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [658-909]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSEVYNAFYK ELFYEEQPKI KPIKLTTSDL LKLFPEDVQF VISTPPNTIT SASTSDNCTS  60
   61 SQSAAQKNIE NFTTLSKYDV YSSTSFIPST SKNTNTNVSK QQQQPQNSTP CSSNRFLFNK 120
  121 SSLISQESNG SNNNSGTQGP GSMNESYSLD NSFNTTNTNM TRQPTTLTRA TDAMTTAPTT 180
  181 PIPYKNTSGS SNNNLWIESP MTNFKGSTIS KSTNKSKMVN TGKNYILGGH NKVKNNSRAQ 240
  241 SIHIDDFENE NN

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	10.54
Match:
Description:	No description for 1i3qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits