YRC Public Data Repository - Protein Structure Prediction

Protein:	CGR1
Organism:	Saccharomyces cerevisiae
Length:	120 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CGR1.

Description	E-value	Query Range	Subject Range
CGR1_ASPFU - rRNA-processing protein cgrA OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FG... CGR1_ASPFU - rRNA-processing protein cgrA OS=Aspergillus fumigatus GN=cgrA PE=3 SV=1 gi\|159123816 - gi\|159123816\|gb\|EDP48935.1\| rRNA processing protein CgrA [Aspergillus fumigatus A1163]	8.0E-22	[8..117]	[9..112]
gi\|151943260 - gi\|151943260\|gb\|EDN61573.1\| coiled-coil protein [Saccharomyces cerevisiae YJM789] CGR1_YEAST - rRNA-processing protein CGR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CGR1 PE=1 S... gi\|190406996 - gi\|190406996\|gb\|EDV10263.1\| coiled-coil protein [Saccharomyces cerevisiae RM11-1a] CGR1 - Protein involved in nucleolar integrity and processing of the pre-rRNA for the 60S ribosome subunit;...	2.0E-21	[1..120]	[1..120]
CGR1_EMENI - rRNA-processing protein cgrA OS=Emericella nidulans GN=cgrA PE=3 SV=2 CGR1_EMENI - rRNA-processing protein cgrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL...	4.0E-17	[8..117]	[9..112]
CGR1_SCHPO - rRNA-processing protein cgr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cgr1 PE=3 SV=... SPAC1556.05c - CGR1 family	0.002	[9..120]	[2..111]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.003	[47..116]	[237..318]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNETGESQK AAKGTPVSGK VWKAEKTPLR AKSRVVKNKK LTSWELKKQK RLEDKQFKER  60
   61 LKALKDEKEE ARQAKITMLK ERREKKEENE RYERLAAKMH AKKVERMRRR EKRNKALKER 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.167491
Match:	PF03879
Description:	Cgr1 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits