YRC Public Data Repository - Protein Structure Prediction

Protein:	ATE1
Organism:	Saccharomyces cerevisiae
Length:	503 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATE1.

Description	E-value	Query Range	Subject Range
gi\|4261604 - gi\|4261604\|gb\|AAD13904.1\|S58126_1111111111111 Unknown [Saccharomyces cerevisiae]	862.0	[0..1]	[503..1]
gi\|50302555, gi\|... - gi\|50302555\|ref\|XP_451213.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640344\|emb\|CAH0280... gi\|49640344 - gi\|49640344\|emb\|CAH02801.1\| KLLA0A04862p [Kluyveromyces lactis]	391.0	[0..2]	[498..4]
gi\|49524088 - gi\|49524088\|emb\|CAG57677.1\| unnamed protein product [Candida glabrata] gi\|50284717, gi\|... - gi\|50284717\|ref\|XP_444786.1\| hypothetical protein CAGL0A00319g [Candida glabrata CBS138], gi\|4952408...	391.0	[0..1]	[498..1]
gi\|44986115, gi\|... - gi\|45201261\|ref\|NP_986831.1\| AGR165Wp [Ashbya gossypii ATCC 10895], gi\|44986115\|gb\|AAS54655.1\| AGR16... gi\|44986115 - gi\|44986115\|gb\|AAS54655.1\| AGR165Wp [Ashbya gossypii ATCC 10895]	374.0	[0..1]	[498..3]
orf19.9658, orf1... - orf19.2110 CGDID:CAL0005273 Assembly 19, Contig19-10139 (206455, 205067) CDS, reverse complemented, ... gi\|68472982, gi\|... - gi\|68472982\|ref\|XP_719556.1\| potential Arginine-tRNA-protein transferase [Candida albicans SC5314], ...	318.0	[0..6]	[497..2]
gi\|28917547, gi\|... - gi\|32415525\|ref\|XP_328242.1\| hypothetical protein [Neurospora crassa], gi\|28917547\|gb\|EAA27245.1\| co... gi\|85080110 - gi\|85080110\|ref\|XP_956481.1\| hypothetical protein NCU01803 [Neurospora crassa OR74A]	311.0	[0..65]	[337..34]
gi\|49652297, gi\|... - gi\|50406436\|ref\|XP_456633.1\| hypothetical protein DEHA0A07172g [Debaryomyces hansenii CBS767], gi\|49...	307.0	[0..6]	[498..2]
ATE_RHILO - Putative arginyl-tRNA--protein transferase OS=Rhizobium loti (strain MAFF303099) GN=ate PE=3 SV=1 ATE_RHILO - Putative arginyl-tRNA--protein transferase OS=Rhizobium loti GN=ate PE=3 SV=1	292.0	[0..31]	[322..8]
ATE_BRUC2 - Putative arginyl-tRNA--protein transferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ate... gi\|254717070 - gi\|254717070\|ref\|ZP_05178881.1\| arginyl-tRNA-protein transferase [Brucella ceti M13/05/1] ATE_BRUSU - Putative arginyl-tRNA--protein transferase OS=Brucella suis GN=ate PE=3 SV=1 ATE_BRUSU - Putative arginyl-tRNA--protein transferase OS=Brucella suis biovar 1 (strain 1330) GN=ate PE=3 SV=1 ATE_BRUO2 - Putative arginyl-tRNA--protein transferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512... ATE_BRUME - Putative arginyl-tRNA--protein transferase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456... gi\|225617260, gi... - gi\|225627255\|ref\|ZP_03785292.1\| arginyl-tRNA--protein transferase [Brucella ceti str. Cudo], gi\|2256... ATE_BRUME - Putative arginyl-tRNA--protein transferase OS=Brucella melitensis GN=ate PE=3 SV=1 gi\|254709872 - gi\|254709872\|ref\|ZP_05171683.1\| arginyl-tRNA-protein transferase [Brucella pinnipedialis B2/94] gi\|254713873 - gi\|254713873\|ref\|ZP_05175684.1\| arginyl-tRNA-protein transferase [Brucella ceti M644/93/1] gi\|254704080 - gi\|254704080\|ref\|ZP_05165908.1\| arginyl-tRNA-protein transferase [Brucella suis bv. 3 str. 686] gi\|254707019 - gi\|254707019\|ref\|ZP_05168847.1\| arginyl-tRNA-protein transferase [Brucella pinnipedialis M163/99/10]	287.0	[0..31]	[323..8]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRFVIWAP SMHNEPAAKC GYCHGNKGGN MDQLFALDSW AHRYMNKMDV VKIENCTIGS  60
   61 FVEHMDVATY DRMCNMGFRR SGKFLYKVDP LRNCCRLYTI RTAPQELNMT KELKKCISRF 120
  121 ATRITSEDYC PAAVASSDFV GKIVNAEMNS KTFYTRFEPA LYSEEKYHLF VKYQEKVHQD 180
  181 YNNSPKSFKR FLCDTPFGPE AVLGTQESWE QLNNWQRMKP GEKLKHMGPV HECYYYEGKL 240
  241 IAITVSDILP SGISSVYFIW DPDYSKWSLG KLSALRDLAI IQRTNLQYYY LGYYIEDCPK 300
  301 MNYKANYGAE VLDVCHSKYI PLKPIQDMIS RGKLFVIGEE ETKVTKELYL VDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [354-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETGRGEGFPT DNVVKYKNIA EEIYGVGGCA FKSANESALE LKELYGIPYE EEDLDTIYHL  60
   61 KEHNGHAPNG IPNVVPGLLP LWELLDIMQS GKITDLEGRL FLFEIETEGI RPLINFYSEP 120
  121 PNVKKRICDV IRLFGFETCM KAVILYSEQM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits