YRC Public Data Repository - Protein Structure Prediction

Protein:	YGL010W
Organism:	Saccharomyces cerevisiae
Length:	174 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGL010W.

Description	E-value	Query Range	Subject Range
gi\|2982301 - gi\|2982301\|gb\|AAC32136.1\| YGL010w-like protein [Picea mariana]	193.0	[0..1]	[174..1]
gi\|6730712, gi\|2... - gi\|6730712\|gb\|AAF27107.1\|AC011809_16 Unknown protein [Arabidopsis thaliana], pir\|\|A86321 F6A14.17 pr...	190.0	[0..4]	[174..6]
YDR2_SCHPO - Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain... SPAC16E8.02 - DUF962 family protein	186.0	[0..8]	[165..4]
gi\|49081540 - gi\|49081540\|gb\|AAT50170.1\| PA0276 [synthetic construct]	171.0	[0..8]	[159..4]
gi\|9946118, gi\|1... - gi\|9946118\|gb\|AAG03665.1\|AE004465_11 hypothetical protein PA0276 [Pseudomonas aeruginosa PAO1], gi\|1... gi\|11348824 - pir\|\|D83612 hypothetical protein PA0276 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|84318544, gi\|... - gi\|84318544\|ref\|ZP_00966967.1\| COG4539: Predicted membrane protein [Pseudomonas aeruginosa C3719], g... gi\|254243373, gi... - gi\|84324356\|ref\|ZP_00972414.1\| COG4539: Predicted membrane protein [Pseudomonas aeruginosa 2192], gi... gi\|107099257 - gi\|107099257\|ref\|ZP_01363175.1\| hypothetical protein PaerPA_01000269 [Pseudomonas aeruginosa PACS2] gi\|218769239, gi... - gi\|218889016\|ref\|YP_002437880.1\| hypothetical protein PLES_02721 [Pseudomonas aeruginosa LESB58], gi...	170.0	[0..8]	[159..4]
gi\|32043447, gi\|... - gi\|32043447\|ref\|ZP_00140709.1\| COG4539: Predicted membrane protein [Pseudomonas aeruginosa UCBPP-PA1...	169.0	[0..8]	[159..4]
tr\|I7B481\|I7B481... - PRS2-like protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0239 PE=4 SV=1 gi\|5091483 - gi\|5091483\|gb\|AAD39556.1\| PRS2-like protein [Pseudomonas putida]	168.0	[0..8]	[161..4]
gi\|148513604, gi... - gi\|82738523\|ref\|ZP_00901354.1\| membrane protein, putative [Pseudomonas putida F1], gi\|82714411\|gb\|EA...	167.0	[0..8]	[161..4]
gi\|50302569, gi\|... - gi\|50302569\|ref\|XP_451220.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640351\|emb\|CAH0280... gi\|49640351 - gi\|49640351\|emb\|CAH02808.1\| KLLA0A05005p [Kluyveromyces lactis]	164.0	[0..1]	[173..1]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEGLLDLRS QLGFYKFYHH NPKNVLIHSI FVPTILFSGS CMLHRVKIYQ SISLTAVLSV  60
   61 LFSIFYCLLY LPTGLLAGVL LLLLNLALID HRVDLTFKQE LGLFTIGWIF QFVGHGVFEK 120
  121 RRPALIDNLV QSLVLAPYFI MFEFLFKLGF MPRLKATLEH DLEIKQRNLR MQRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.259637
Match:	PF06127.2
Description:	No description for PF06127.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.932	N/A	N/A	a.29.6	Description not found.
View	Download	0.919	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.869	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.848	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.820	N/A	N/A	a.1.1	Globin-like
View	Download	0.818	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.818	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.774	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.746	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.706	N/A	N/A	a.63.1	Apolipophorin-III

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits