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View Structure Prediction Details

Protein: PMC1
Organism: Saccharomyces cerevisiae
Length: 1173 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMC1.

Description E-value Query
Range		 Subject
Range
AT1A2_RAT - Sodium/potassium-transporting ATPase subunit alpha-2 OS=Rattus norvegicus GN=Atp1a2 PE=1 SV=1
AT1A2_MOUSE - Sodium/potassium-transporting ATPase subunit alpha-2 OS=Mus musculus GN=Atp1a2 PE=1 SV=1
 0.0 [16..1139] [8..1019]
ATP1A3 - ATPase, Na+/K+ transporting, alpha 3 polypeptide
 0.0 [20..1139] [3..1012]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1
 0.0 [12..1139] [5..1020]
AT1A3_CHICK - Sodium/potassium-transporting ATPase subunit alpha-3 OS=Gallus gallus GN=ATP1A3 PE=2 SV=1
 0.0 [22..1139] [4..1009]
gi|1364218 - gi|1364218|emb|CAA26582.1| unnamed protein product [Ovis aries]
 0.0 [13..1139] [1..1015]
gi|14349292 - gi|14349292|dbj|BAB60722.1| Na,K-ATPase alpha subunit 3 [Carassius auratus]
 0.0 [11..1139] [3..1021]
AT1A1_RHIMB - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Rhinella marina GN=ATP1A1 PE=1 SV=2
 0.0 [12..1139] [5..1022]
AT1A1_CANLF - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Canis lupus familiaris GN=ATP1A1 PE=2 SV=1
 0.0 [12..1139] [5..1020]

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Predicted Domain #1
Region A:
Residues: [1-98] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRQDENSAL LANNENNKPS YTGNENGVYD NFKLSKSQLS DLHNPKSIRS FVRLFGYESN  60
   61 SLFKYLKTDK NAGISLPEIS NYRKTNRYKN YGDNSLPE

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [192-327] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKIIVIRNDQ EILISIHHVL VGDVISLQTG DVVPADCVMI SGKCEADESS ITGESNTIQK  60
   61 FPVDNSLRDF KKFNSIDSHN HSKPLDIGDV NEDGNKIADC MLISGSRILS GLGRGVITSV 120
  121 GINSVYGQTM TSLNAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1781.54902
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #2
Region A:
Residues: [99-180] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIPKSFLQLV WAAFNDKTMQ LLTVAAVVSF VLGLYELWMQ PPQYDPEGNK IKQVDWIEGV  60
   61 AIMIAVFVVV LVSAANDYQK EL

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [328-412] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PESTPLQLHL SQLADNISVY GCVSAIILFL VLFTRYLFYI IPEDGRFHDL DPAQKGSKFM  60
   61 NIFITSITVI VVAVPEGLPL AVTLA

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [892-1173] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSVSIKKFIQ FQLIVNITAV ILTFVSSVAS SDETSVLTAV QLLWINLIMD TLAALALATD  60
   61 KPDPNIMDRK PRGRSTSLIS VSTWKMILSQ ATLQLIVTFI LHFYGPELFF KKHEDEITSH 120
  121 QQQQLNAMTF NTFVWLQFFT MLVSRKLDEG DGISNWRGRI SAANLNFFQD LGRNYYFLTI 180
  181 MAIIGSCQVL IMFFGGAPFS IARQTKSMWI TAVLCGMLSL IMGVLVRICP DEVAVKVFPA 240
  241 AFVQRFKYVF GLEFLRKNHT GKHDDEEALL EESDSPESTA FY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1781.54902
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #3
Region A:
Residues: [181-191] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFAKLNKKKE N

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [413-452] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAFATTRMTK DGNLVRVLRS CETMGSATAV CSDKTGTLTE

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [740-891] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRAGVRESVQ QCQRAGVTVR MVTGDNILTA KAIARNCAIL STDISSEAYS AMEGTEFRKL  60
   61 TKNERIRILP NLRVLARSSP EDKRLLVETL KGMGDVVAVT GDGTNDAPAL KLADVGFSMG 120
  121 ISGTEVAREA SDIILMTDDF SAIVNAIKWG RC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1781.54902
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M

Predicted Domain #4
Region A:
Residues: [453-739] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVMTVVRGFP GNSKFDDSKS LPVSEQRKLN SKKVFEENCS SSLRNDLLAN IVLNSTAFEN  60
   61 RDYKKNDKNT NGSKNMSKNL SFLDKCKSRL SFFKKGNRED DEDQLFKNVN KGRQEPFIGS 120
  121 KTETALLSLA RLSLGLQPGE LQYLRDQPME KFNIEKVVQT IPFESSRKWA GLVVKYKEGK 180
  181 NKKPFYRFFI KGAAEIVSKN CSYKRNSDDT LEEINEDNKK ETDDEIKNLA SDALRAISVA 240
  241 HKDFCECDSW PPEQLRDKDS PNIAALDLLF NSQKGLILDG LLGIQDP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1781.54902
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle