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View Structure Prediction Details

Protein: RPL2A, RPL2B
Organism: Saccharomyces cerevisiae
Length: 254 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL2A, RPL2B.

Description E-value Query
Range		 Subject
Range
RL8_XENLA - 60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3
 1.0E-86 [1..254] [1..254]
gi|12054507 - gi|12054507|emb|CAC20221.1| ribosomal protein L2 [Glycine max]
 1.0E-84 [1..248] [1..248]
RL83_ARATH - 60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=1 SV=2
 2.0E-84 [1..252] [1..252]
RL8_SOLLC - 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1
 1.0E-83 [1..252] [1..252]
gi|123993267, gi... - gi|61362485|gb|AAX42230.1| ribosomal protein L8 [synthetic construct], gi|61362478|gb|AAX42229.1| ri...
gi|15341853, gi|... - gi|30583597|gb|AAP36043.1| ribosomal protein L8 [Homo sapiens], gi|15341853|gb|AAH13104.1| Ribosomal...
 2.0E-82 [1..254] [1..254]
gi|6440928 - gi|6440928|dbj|BAA78597.1| 60S ribosomal protein L2 [Chlamydomonas sp. HS-5]
 2.0E-81 [1..253] [1..253]
RL8_SPOFR - 60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1
gi|54609205, gi|... - gi|54609205|gb|AAV34818.1| ribosomal protein L8 [Bombyx mori], gi|112983487|ref|NP_001037141.1| ribo...
gi|170779023 - gi|170779023|gb|ACB36910.1| ribosomal protein L8 [Antheraea pernyi]
RL8_MAMBR - 60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1
 3.0E-81 [1..251] [1..251]
RL8_TOBAC - 60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1
 3.0E-81 [1..248] [1..248]

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Predicted Domain #1
Region A:
Residues: [1-12] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVIRNQRK GA

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [195-254] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWPKTRGVAM NPVDHPHGGG NHQHIGKAST ISRGAVSGQK AGLIAARRTG LLRGSQKTQD  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1242.39794
Match: 1k5yB_
Description: No description for 1k5yB_ was found.

Predicted Domain #2
Region A:
Residues: [13-194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSIFTSHTRL RQGAAKLRTL DYAERHGYIR GIVKQIVHDS GRGAPLAKVV FRDPYKYRLR  60
   61 EEIFIANEGV HTGQFIYAGK KASLNVGNVL PLGSVPEGTI VSNVEEKPGD RGALARASGN 120
  121 YVIIIGHNPD ENKTRVRLPS GAKKVISSDA RGVIGVIAGG GRVDKPLLKA GRAFHKYRLK 180
  181 RN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1242.39794
Match: 1k5yB_
Description: No description for 1k5yB_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle