| Protein: | LSB3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 451 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSB3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..451] | [1..451] |
|
|
4.0E-98 | [1..450] | [1..429] |
|
|
1.0E-80 | [3..368] | [1..340] |
|
|
9.0E-79 | [3..368] | [1..338] |
|
|
2.0E-73 | [3..212] | [268..485] |
|
Region A: Residues: [1-362] |
1 11 21 31 41 51
| | | | | |
1 MGINNPIPRS LKSETNFVKP NQVFGADQVI PPDVLKRAKG LAIITILKAG FLFSGRAGSG 60
61 VIVARLKDGT WSAPSAIAMA GAGAGGMVGI ELTDFVFILN TQDAVKSFSE FGTITLGGNV 120
121 SVSAGPLGRS AEAAASASAG GVAAVFAYSK SKGLFAGVSV EGSAIIERRE ANRKFYGDNC 180
181 TAKMILSGRI RPPPAVDPLF RVLESRAFNY RPSNGGRGSF DDDEDDYYDD DDYYNDIPSS 240
241 FSSTDASSTR PNTRSTRRRA QSGSRYTFDD DDDDDDYGTG YSRNSRLAPT NSGGSGGKLD 300
301 DPSGASSYYA SHRRSGTAQS RARSSRNRWA DDEYDDYDDD YESGYRRGNG RDRTKDREVD 360
361 DL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [363-451] |
1 11 21 31 41 51
| | | | | |
1 SNRFSKSRIS SASTPQTSQG RFTAPTSPST SSPKAVALYS FAGEESGDLP FRKGDVITIL 60
61 KKSDSQNDWW TGRVNGREGI FPANYVELV
|
| Detection Method: | |
| Confidence: | 117.491979 |
| Match: | 1semA_ |
| Description: | Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 2.99729194621598 | bayes_pls_golite062009 |
| protein binding | 2.48473240495651 | bayes_pls_golite062009 |
| actin binding | 2.2471575515877 | bayes_pls_golite062009 |
| binding | 2.18950934715874 | bayes_pls_golite062009 |
| actin filament binding | 1.11370928993107 | bayes_pls_golite062009 |
| transporter activity | 0.164166239570489 | bayes_pls_golite062009 |
