| Protein: | YFR016C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1233 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFR016C.
| Description | E-value | Query Range |
Subject Range |
|
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9.0E-83 | [75..1149] | [839..1890] |
|
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1.0E-82 | [41..1155] | [807..1939] |
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1.0E-82 | [41..1155] | [807..1939] |
|
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5.0E-82 | [75..1149] | [837..1888] |
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2.0E-81 | [75..1149] | [842..1893] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MVESLTVENQ EHNVQPPSVT SAGDSYSTLA TDLPLPSTND IIESRDQLTE SDLDEAINAT 60
61 ENFAQELSSQ RKS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.424 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.389 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.348 | a.2.7 | tRNA-binding arm |
| View | Download | 0.416 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.333 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.326 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.315 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.306 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.299 | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.290 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.289 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.267 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.266 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.253 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.248 | a.46.1 | Methionine synthase domain |
| View | Download | 0.244 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.244 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.237 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.237 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.228 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.215 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.212 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.211 | a.77.1 | DEATH domain |
| View | Download | 0.202 | a.39.1 | EF-hand |
|
Region A: Residues: [74-425] |
1 11 21 31 41 51
| | | | | |
1 SKLKGHKKKN QGQIKANRDR DTIVKLSSSV GETEEASTRD AISHDLERKD DVIEIATDTI 60
61 NDATESPTQI PIDVNVVIKE TSTNNVAEGT ENVPPIKEST GIEVGNSPIT RRKKNKKKKT 120
121 TNRRGRNSSN PADTTDLSKQ STLDSILVGI EEYLQEDGSK NEDIKVNIVQ DEPVNVEKMD 180
181 IRTRNESSDK TFDIDVPNKD NVDETSSKSE NNINEEKAEH TLPREENEIL NVNEGNAASF 240
241 KHQLEPHGLE AGDENGQAST KDVESESLTK NGFNFKENES KHLKAGEKQQ TESDRDGISP 300
301 SVLAKNQKET EIGKEDHVFE QKDKEDEKCR KELSVNHENN MSHNFNAAGS DS
|
| Detection Method: | |
| Confidence: | 26.30103 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [426-481] |
1 11 21 31 41 51
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1 IIPPETERET YDDETMGPTK RISDNEKNLQ HGTNDISVEV EKEEEEEEEE EENSTF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.358 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.401 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.552 | a.30.1 | ROP protein |
| View | Download | 0.436 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.354 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.314 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.310 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.288 | a.46.1 | Methionine synthase domain |
| View | Download | 0.282 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.266 | a.2.7 | tRNA-binding arm |
| View | Download | 0.261 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.243 | a.2.3 | Chaperone J-domain |
| View | Download | 0.231 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.205 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [482-814] |
1 11 21 31 41 51
| | | | | |
1 SKVKKENVTG EQEAVRNNEV SGTEEESTSK GEEIMGGDEK QSEAGEKSSI IEIEGSANSA 60
61 KISKDNLVLE DEAEAPTQEN KPTEVVGEID IPDAPRDDVE IVEAVEKNII PEDLEVAKED 120
121 QEGEQVKLDE PVKAMKDDKI AMRGAESISE DMKKKQEGTA ELSNEKAKKE VDETARESAE 180
181 GVEVEKSKTP ESPKVVKRCT SGRPEDLQIN ERDPEVLKED VRVPDEDVKP EIATTIENSE 240
241 EEDPKSQRVQ ISTEQAETTQ KDMGDVGSTT SFKEEEKPKR FEITQEGDKI TGKDTNHEHG 300
301 EATEAASENS KASDVGTAEK YIEPSSESVK KDT
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| Detection Method: | |
| Confidence: | 13.21 |
| Match: | 1i3qA |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [815-917] |
1 11 21 31 41 51
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1 EEDAEVENSE KTEFIKVKAE LENLDAPKEA EVTAELNKEN EDVEVDTEED AEVENSEKTE 60
61 FIKVKAELGN LDAPKEAEVT AELNKENEDV EVAATSKEDI ETK
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| Detection Method: | |
| Confidence: | 10.18 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [918-996] |
1 11 21 31 41 51
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1 CSEPAETPIE DGTCTEAEVS KKDAEAVTKE DENMENSKIA EALKDVTGDQ EIDDINISDE 60
61 FQRTVELPEL EKQDIKDNK
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| Detection Method: | |
| Confidence: | 10.18 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [997-1066] |
1 11 21 31 41 51
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1 GEDKELEVEE TEKETSLPDL VVEENITEEK NEIKQEEEEV SQLDFNETES ISKEAPNNDE 60
61 NGFEDQSTRE
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| Detection Method: | |
| Confidence: | 10.18 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [1067-1180] |
1 11 21 31 41 51
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1 NPKKASADDI FKDILDETNE FLEQLKIVDD SELNALLQSL DAKDSTTQTT EQSKKNNDKP 60
61 QDVITTSEIR KLNEKEPVYI YTSLAGGGFH MIPRTNRLST ILTANRIPFT YRDL
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| Detection Method: | |
| Confidence: | 10.18 |
| Match: | 1l8mA |
| Description: | No description for 1l8mA was found. |
|
Region A: Residues: [1181-1233] |
1 11 21 31 41 51
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1 GTDDEARKVW KTFSKGRSLP GVVRGHNDLI GNWEEIEEAN EDYKLRELIY DTI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.722 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.515 | a.4.1 | Homeodomain-like |
| View | Download | 0.528 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.483 | d.68.7 | R3H domain |
| View | Download | 0.453 | a.4.10 | N-terminal Zn binding domain of HIV integrase |
| View | Download | 0.431 | g.15.1 | Ovomucoid/PCI-1 like inhibitors |
| View | Download | 0.430 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.422 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.395 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.372 | a.4.1 | Homeodomain-like |
| View | Download | 0.367 | a.140.1 | LEM domain |
| View | Download | 0.333 | a.4.1 | Homeodomain-like |
| View | Download | 0.322 | d.58.49 | YajQ-like |
| View | Download | 0.317 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.303 | g.58.1 | Pheromone ER-23 |
| View | Download | 0.299 | a.65.1 | Annexin |
| View | Download | 0.281 | a.4.1 | Homeodomain-like |
| View | Download | 0.277 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.272 | a.64.1 | Saposin |
| View | Download | 0.266 | a.10.1 | Protozoan pheromone proteins |
| View | Download | 0.259 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.258 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
| View | Download | 0.256 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.256 | b.40.6 | MOP-like |
| View | Download | 0.239 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.233 | d.9.2 | Description not found. |
| View | Download | 0.233 | d.58.17 | Metal-binding domain |
| View | Download | 0.231 | g.34.1 | HIV-1 VPU cytoplasmic domain |
| View | Download | 0.227 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.214 | d.58.17 | Metal-binding domain |
| View | Download | 0.205 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
