YRC Public Data Repository - Protein Structure Prediction

Protein:	AIM13
Organism:	Saccharomyces cerevisiae
Length:	170 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIM13.

Description	E-value	Query Range	Subject Range
gi\|553147 - gi\|553147\|gb\|AAB59334.1\| ORF; no protein homologies to this open reading frame were detected; putati...	189.0	[0..1]	[111..1]
gi\|49527988 - gi\|49527988\|emb\|CAG61639.1\| unnamed protein product [Candida glabrata] gi\|50292487, gi\|... - gi\|50292487\|ref\|XP_448676.1\| unnamed protein product [Candida glabrata], gi\|49527988\|emb\|CAG61639.1\|...	119.0	[0..1]	[168..1]
gi\|49640600 - gi\|49640600\|emb\|CAH03057.1\| KLLA0A10769p [Kluyveromyces lactis] gi\|49640600, gi\|... - gi\|50303063\|ref\|XP_451469.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640600\|emb\|CAH0305...	116.0	[0..1]	[169..1]
gi\|44983521, gi\|... - gi\|45190579\|ref\|NP_984833.1\| AEL028Cp [Ashbya gossypii ATCC 10895], gi\|44983521\|gb\|AAS52657.1\| AEL02... gi\|44983521 - gi\|44983521\|gb\|AAS52657.1\| AEL028Cp [Ashbya gossypii ATCC 10895]	114.0	[0..14]	[169..92]
gi\|50426709, gi\|... - gi\|50426709\|ref\|XP_461952.1\| hypothetical protein DEHA0G10065g [Debaryomyces hansenii CBS767], gi\|49... gi\|49657622\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767]	94.0	[0..1]	[168..1]
gi\|90300716, gi\|... - gi\|90300716\|gb\|EAS30347.1\| hypothetical protein CIMG_05826 [Coccidioides immitis RS], gi\|119181438\|r...	63.0	[0..2]	[168..5]
gi\|88182453, gi\|... - gi\|88182453\|gb\|EAQ89921.1\| hypothetical protein CHGG_06540 [Chaetomium globosum CBS 148.51], gi\|1161...	59.0	[0..1]	[168..1]
gi\|28926674, gi\|... - gi\|38566893\|emb\|CAE76198.1\| related to ochre suppressor tyr-tRNA [Neurospora crassa], gi\|32417450\|re... gi\|85115448 - gi\|85115448\|ref\|XP_964878.1\| hypothetical protein NCU02013 [Neurospora crassa OR74A]	58.0	[0..27]	[168..25]
gi\|50549749, gi\|... - gi\|50549749\|ref\|XP_502345.1\| hypothetical protein [Yarrowia lipolytica], gi\|49648213\|emb\|CAG80533.1\|...	57.0	[0..39]	[165..17]
gi\|46128297, gi\|... - gi\|46128297\|ref\|XP_388702.1\| hypothetical protein FG08526.1 [Gibberella zeae PH-1], gi\|42549260\|gb\|E...	56.0	[0..1]	[168..30]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSNTSKVGA GAEKQQVYTP LTQIDFSQSL VSQLDSSKES DYVTKQNAEK FIEKKVSQRL  60
   61 SNLEVETLKK FEDTLNNSLL SDDDKDAVDG ISSSSLNNQI ESLNKKLTLF DQLELQKLEK 120
  121 YGGAKGKSDK KTDNGSISIK AKLTECLLAN KGKPLNCYEE MEEFKKLVMG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	2clyA
Description:	No description for 2clyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits