YRC Public Data Repository - Protein Structure Prediction

Protein:	YPI1
Organism:	Saccharomyces cerevisiae
Length:	155 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPI1.

Description	E-value	Query Range	Subject Range
YPI1_YEAS7 - Type 1 phosphatases regulator YPI1 OS=Saccharomyces cerevisiae (strain YJM789) GN=YPI1 PE=3 SV=1 gi\|207345661 - gi\|207345661\|gb\|EDZ72413.1\| YFR003Cp-like protein [Saccharomyces cerevisiae AWRI1631] YPI1 - Inhibitor of the type I protein phosphatase Glc7p, which is involved in regulation of a variety of m... gi\|190406575 - gi\|190406575\|gb\|EDV09842.1\| hypothetical protein SCRG_05549 [Saccharomyces cerevisiae RM11-1a] YPI1_YEAST - Type 1 phosphatases regulator YPI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPI1 ...	5.0E-37	[1..155]	[1..155]
CG13994-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG13994 (CG13994, FBgn0031772). It is a prote... gi\|220957912, gi... - gi\|220957912\|gb\|ACL91499.1\| CG13994-PA [synthetic construct], gi\|220951008\|gb\|ACL88047.1\| CG13994-PA...	3.0E-23	[8..107]	[5..106]
gi\|20197895, gi\|... - gi\|21555013\|gb\|AAM63754.1\| unknown [Arabidopsis thaliana], gi\|20197895\|gb\|AAM15305.1\| Expressed prot...	1.0E-19	[12..110]	[2..107]
CE00756 - status:Confirmed UniProt:Q95YE7 protein_id:AAK85440.1	3.0E-17	[1..100]	[1..107]
YPI1_NEUCR - Type 1 phosphatases regulator ypi-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.7... YPI1_NEUCR - Type 1 phosphatases regulator ypi-1 OS=Neurospora crassa GN=ypi-1 PE=3 SV=2	2.0E-15	[5..82]	[10..78]
YPI1_SCHPO - Type 1 phosphatases regulator ypi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypi1 PE... SPAC6B12.13 - protein phosphatase inhibitor	9.0E-13	[11..82]	[17..77]
PP1RB_PANTR - Protein phosphatase 1 regulatory subunit 11 OS=Pan troglodytes GN=PPP1R11 PE=3 SV=1 PP1RB_MACMU - Protein phosphatase 1 regulatory subunit 11 OS=Macaca mulatta GN=PPP1R11 PE=3 SV=1 PPP1R11 - protein phosphatase 1, regulatory (inhibitor) subunit 11	2.0E-11	[22..81]	[9..71]
gi\|12837883, gi\|... - gi\|18390327\|ref\|NP_083908.1\| protein phosphatase 1, regulatory (inhibitor) subunit 11 [Mus musculus]...	1.0E-10	[12..81]	[13..76]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNQMAMGS EQQQTVGSRT VSVEEVPAVL QLRATQDPPR SQEAMPTRHN VRWEENVIDN  60
   61 ENMNKKKTKI CCIFHPQNED EEECNHHSDD DGSSSSGSSS SESENEKDLD FNERRQRRLE 120
  121 RRHRKLEKKR SYSPNAYEIQ PDYSEYRRKQ QEKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pcons
Confidence:	1.93
Match:	1kkqC
Description:	Peroxisome proliferator activated receptor alpha, PPAR-alpha
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits