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View Structure Prediction Details

Protein: YFL068W, YLL067W...
Organism: Saccharomyces cerevisiae
Length: 160 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFL068W, YLL067W....

Description E-value Query
Range
Subject
Range
YBL113W-A - [DUBIOUS] Dubious open reading frame unlikely to encode a protein; identified by gene-trapping, micr...
YB13A_YEAST - Putative UPF0479 protein YBL113W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBL11...
2.0E-69 [1..160] [1..160]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPAKLQLDV LRTLQSSARH GTQTLKNSNF LERFHKDRIV FCLPFFPALF LVPVQKVLQH  60
   61 LCLRFTQVAP YFIIQLFDLP SRHAENLAPL LASCRIQYTN CFSSSSNGQV PSIISLYLRV 120
  121 DLSPFYAKKF QIPYRVPMIW LDVFQVFFVF LVISQHSLHS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.738 a.24.1 Apolipoprotein
View Download 0.715 a.118.13 Arp2/3 complex 16 kDa subunit ARPC5
View Download 0.711 a.73.1 Retrovirus capsid protein, N-terminal core domain
View Download 0.638 a.26.1 4-helical cytokines
View Download 0.585 a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle