YRC Public Data Repository - Protein Structure Prediction

Protein:	YFL067W
Organism:	Saccharomyces cerevisiae
Length:	175 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFL067W.

Description	E-value	Query Range	Subject Range
gi\|12642610 - gi\|12642610\|gb\|AAK00309.1\|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocla...	1.0E-26	[1..164]	[1477..1656]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-23	[78..154]	[1557..1633]
gi\|14251025, gi\|... - gi\|14251025\|ref\|NP_116387.1\| T38 [Tupaiid herpesvirus 1], gi\|14210719\|gb\|AAK57082.1\| T38 [Tupaia her...	1.0E-22	[20..174]	[309..463]
MAGE1_MACFA - Melanoma-associated antigen E1 OS=Macaca fascicularis GN=MAGEE1 PE=2 SV=1	7.0E-22	[3..165]	[257..421]
gi\|4097231 - gi\|4097231\|gb\|AAD00075.1\| multiple banded antigen [Ureaplasma urealyticum]	4.0E-21	[4..166]	[211..379]
gi\|15293447, gi\|... - gi\|15293447\|gb\|AAK94970.1\|AF396970_5 VspA [Mycoplasma bovis], gi\|1507719\|gb\|AAC37114.1\| vspA [Mycopl...	3.0E-19	[2..166]	[171..337]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIILSIAI FIGVLLGTSV GAGSGSSISP DVDAGSGSRT SPDVDAGSGS RISAGVGTFS  60
   61 GSSTSPDVDA GSGSSTSPDV GAGSGSSISA GVGSRIGTGI GSRIGTGIGT GIGSRISTSI 120
  121 GSRISPDVGT SSGNRISTGV STGISTTMNA RVAVLITAAI LSAPVTAIAL LEARR

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.19
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits