YRC Public Data Repository - Protein Structure Prediction

Protein:	SNO3
Organism:	Saccharomyces cerevisiae
Length:	222 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNO3.

Description	E-value	Query Range	Subject Range
gi\|190409296 - gi\|190409296\|gb\|EDV12561.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207345759, gi... - gi\|207345759\|gb\|EDZ72473.1\| YFL060Cp-like protein [Saccharomyces cerevisiae AWRI1631], gi\|207342009\|... gi\|151944606 - gi\|151944606\|gb\|EDN62883.1\| conserved protein [Saccharomyces cerevisiae YJM789] SNO2 - Protein of unknown function, nearly identical to Sno3p; expression is induced before the diauxic shi... SNO2_YEAST - Probable pyridoxal 5'-phosphate synthase subunit SNO2 OS=Saccharomyces cerevisiae (strain ATCC 20450...	1.0E-43	[1..222]	[1..222]
PYRG_BACHD - CTP synthase OS=Bacillus halodurans GN=pyrG PE=3 SV=1 PYRG_BACHD - CTP synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)...	6.0E-36	[3..218]	[292..532]
HIS5_CORGL - Imidazole glycerol phosphate synthase subunit HisH OS=Corynebacterium glutamicum (strain ATCC 13032 ... HIS5_CORGL - Imidazole glycerol phosphate synthase subunit HisH OS=Corynebacterium glutamicum GN=hisH PE=3 SV=2	6.0E-36	[1..215]	[1..211]
PYRG_LISMO - CTP synthase OS=Listeria monocytogenes GN=pyrG PE=3 SV=1 gi\|224500487 - gi\|224500487\|ref\|ZP_03668836.1\| CTP synthetase [Listeria monocytogenes Finland 1988] gi\|224503651 - gi\|224503651\|ref\|ZP_03671958.1\| CTP synthetase [Listeria monocytogenes FSL R2-561] gi\|153192239, gi... - gi\|153192239\|ref\|ZP_01939259.1\| CTP synthase [Listeria monocytogenes J2818], gi\|127764299\|gb\|EBA2483... gi\|133729042, gi... - gi\|153175829\|ref\|ZP_01931116.1\| CTP synthase [Listeria monocytogenes FSL N3-165], gi\|133729042\|gb\|EB... gi\|254938185, gi... - gi\|254938185\|ref\|ZP_05269882.1\| CTP synthetase [Listeria monocytogenes F6900], gi\|153180671\|ref\|ZP_0... gi\|47097102, gi\|... - gi\|47097102\|ref\|ZP_00234671.1\| CTP synthase [Listeria monocytogenes str. 1/2a F6854], gi\|47014507\|gb... PYRG_LISMO - CTP synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=pyrG PE=3 SV=1 gi\|254900990 - gi\|254900990\|ref\|ZP_05260914.1\| CTP synthetase [Listeria monocytogenes J0161]	1.0E-35	[2..219]	[290..532]
gi\|2983181, gi\|1... - gi\|2983181\|gb\|AAC06781.1\| anthranilate synthase component II [Aquifex aeolicus VF5], gi\|15606008\|ref... gi\|7436747 - pir\|\|E70349 anthranilate synthase component II - Aquifex aeolicus	2.0E-35	[3..219]	[1..193]
PYRG_CLOAB - CTP synthase OS=Clostridium acetobutylicum GN=pyrG PE=3 SV=1 PYRG_CLOAB - CTP synthase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-...	2.0E-35	[3..216]	[292..527]
PYRG_LISIN - CTP synthase OS=Listeria innocua GN=pyrG PE=3 SV=1 PYRG_LISIN - CTP synthase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=pyrG PE=3 SV=1	2.0E-35	[2..219]	[290..532]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-35	[6..214]	[3..192]

Back

Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVIGVLAL QGAFIEHVRH VEKCIVENRD FYEKKLSVMT VKDKNQLAQC DALIIPGGES  60
   61 TAMSLIAERT GFYDDLYAFV HNPSKVTWGT CAGLIYISQQ LSNEAKLVKT LNLLKVKVKR 120
  121 NAFGRQAQSS TRICDFSNFI PHCNDFPATF IRAPVIEEVL DPEHVQVLYK LDGKDNGGQE 180
  181 LIVAAKQKNN ILATSFHPEL AENDIRFHDW FIREFVLKNY SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1gpmA_
Description:	GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits