YRC Public Data Repository - Protein Structure Prediction

Protein:	TUB2
Organism:	Saccharomyces cerevisiae
Length:	457 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUB2.

Description	E-value	Query Range	Subject Range
TBB1_MANSE - Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1	0.0	[1..434]	[1..434]
gi\|19773428, gi\|... - gi\|19773428\|dbj\|BAB86853.1\| beta-tubulin [Bombyx mori], gi\|112983318\|ref\|NP_001036964.1\| beta-tubuli...	0.0	[1..434]	[1..434]
TBB4_XENLA - Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1	0.0	[1..430]	[1..430]
gi\|10242186 - gi\|10242186\|gb\|AAG15328.1\|AF255954_1 beta tubulin [Chionodraco rastrospinosus] gi\|10242160 - gi\|10242160\|gb\|AAG15315.1\|AF255553_1 beta tubulin [Notothenia coriiceps]	0.0	[1..430]	[1..430]
TBB_PARLI - Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1	0.0	[1..430]	[1..430]
gi\|2443346 - gi\|2443346\|dbj\|BAA22382.1\| beta-tubulin [Halocynthia roretzi]	0.0	[1..430]	[1..430]
gi\|157767470 - gi\|157767470\|ref\|XP_001667215.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae AF16] tbb-4 - tubulin beta chain status:Partially_confirmed UniProt:P41937 protein_id:CAA86310.1 gi\|39596183, gi\|... - gi\|39596183\|emb\|CAE69820.1\| Hypothetical protein CBG16137 [Caenorhabditis briggsae], gi\|187026681\|em...	0.0	[1..444]	[1..444]
TBB1_MAIZE - Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1	0.0	[1..430]	[1..430]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIIHISTG QCGNQIGAAF WETICGEHGL DFNGTYHGHD DIQKERLNVY FNEASSGKWV  60
   61 PRSINVDLEP GTIDAVRNSA IGNLFRPDNY IFGQSSAGNV WAKGHYTEGA ELVDSVMDVI 120
  121 RREAEGCDSL QGFQITHSLG GGTGSGMGTL LISKIREEFP DRMMATFSVL PSPKTSDTVV 180
  181 EPYNATLSVH QLVEHSDETF CIDNEALYDI CQRTLKLNQP SYGDLNNLVS SVMSGVTTSL 240
  241 RYPGQLNSDL RKLAVNLVPF PRLHFFMVGY APLTAIGSQS FRSLTVPELT QQMFDAKNMM 300
  301 AAADPRNGRY LTVAAFFRGK VSVKEVEDEM HKVQSKNSDY FVEWIPNNVQ TAVCSVAPQG 360
  361 LDMAATFIAN STSIQELFKR VGDQFSAMFK RKAFLHWYTS EGMDELEFSE AESNMNDLVS 420
  421 EYQQYQEATV EDDEEVDENG DFGAPQNQDE PITENFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11000.0
Match:	1ffxB_
Description:	Tubulin:stathmin-like domain complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits