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View Structure Prediction Details

Protein: YFL034W
Organism: Saccharomyces cerevisiae
Length: 1073 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFL034W.

Description E-value Query
Range
Subject
Range
YFL034W - Putative integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal ...
gi|14318485|ref|... - Putative integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal ...
0.0 [1..1073] [1..1073]
YELD_SCHPO - Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
SPAC6F6.13c - DUF726 family protein
0.0 [254..930] [109..750]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [131..1001] [135..893]
gi|15488651 - gi|15488651|gb|AAH13471.1| Transmembrane and coiled-coil domains 4 [Mus musculus]
0.0 [398..874] [31..517]
gi|85082258 - gi|85082258|ref|XP_956878.1| hypothetical protein NCU01672 [Neurospora crassa OR74A]
gi|16944435, gi|... - gi|32415263|ref|XP_328111.1| hypothetical protein ( (AL355927) conserved hypothetical protein [Neuro...
0.0 [424..916] [245..779]
gi|7486029, gi|7... - pir||T04590 hypothetical protein F23E13.100 - Arabidopsis thaliana, gi|7270574|emb|CAB80292.1| puta...
0.0 [432..875] [82..506]
gi|4826467 - gi|4826467|emb|CAB42850.1| hypothetical protein [Homo sapiens]
0.0 [374..776] [10..423]

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Predicted Domain #1
Region A:
Residues: [1-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSEEDLGV QLKGLKIARH LKESGEHTDE ESNSSPEHDC GLSNQDDLTV MHTQAKEEVF  60
   61 KRREEDGTRT EDALHEGEAG KEGTGFPSSQ SVCSPNEADS GIDRADKPIL LDPFKSVHDT 120
  121 DPVPGTKSRS NSDSDSDSDD GGWQEMPAVS SFNIYNHRGE LELTSKVRNS EQASETSPTV 180
  181 PPGKNCKSVN DSRFDYTKMA AEQQAQRSYR TNKKTDFLFD HKVLKKKINS SQTSVNLTSS 240
  241 PSTTSLNNEK NNDDDDDDSY DEYEDDVEPV NDLNRDSQLN ITKNLLSDME KFAYVGAINI 300
  301 LANQMCTNLA TLCLCIDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [319-844]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSHKNLAHRL QFTQKDMAAW KTVVLSRLYD HLGISQEEIV MIEKLSLHKI QLEDLCKCLK  60
   61 TTQSIDNPWE NDRDHEEDGI EETTERMSPN EQNGSVQAST PDPEQSATPE TPKAKQSPLS 120
  121 SDVPGKVLDP ENVKSQDKLN IDVAWTIICD LFLICLQSST YDSRSRTLLI NFAKVLNMTS 180
  181 LEICEFERRV TDSLDMEQST EDQVWDEQDH MRNRRRSKRR KKMAYVALAM VGGSLVLGLS 240
  241 GGLLAPVIGG GIAAGLSTIG ITGATSFLTG VGGTTVVAVS STAIGANIGA RGMSKRMGSV 300
  301 RTFEFRPLHN NRRVNLILTV SGWMVGNEDD VRLPFSTVDP VEGDLYSLYW EPEMLKSIGQ 360
  361 TVSIVATEIF TTSLQQILGA TVLTALISSI QWPMALSKLG YILDNPWNVS LDRAWSAGKI 420
  421 LADTLIARNL GARPITLVGF SIGARVIFSC LIELCKKKAL GLIENVYLFG TPAVMKKEQL 480
  481 VMARSVVSGR FVNGYSDKDW FLAYLFRAAA GGFSAVMGIS TIENVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [845-1073]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIENINCTEF VDGHLNYRKS MPKLLKRIGI AVLSEEFVEI EEMMNPEEVK RKRKLINDVD  60
   61 AAQKKLSERK KHNSWVPKWL KPKKSKWKVM VEEAVEEGRD MQDLPENDVN NNENENPDEH 120
  121 EGIARQKRRD AALVDHGALM HELQLIKQAM HEDEIKNKAC LPGEDKEVES SNDFLGESHY 180
  181 KPPSTPKINP PQSPNNFQLL SAGRTILPED DDFDPRGKKK VEFSFPDDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [447-544]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPENVKSQDK LNIDVAWTII CDLFLICLQS STYDSRSRTL LINFAKVLNM TSLEICEFER  60
   61 RVTDSLDMEQ STEDQVWDEQ DHMRNRRRSK RRKKMAYV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [545-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALAMVGGSLV LGLSGGLLAP VIGGGIAAGL STIGITGATS FLTGVGGTTV VAVSSTAIGA  60
   61 NIGARGMSKR MGSVRTFEFR PLHNNRRVNL ILTVSGWMVG NE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 1c0aB
Description: CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [647-721]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDVRLPFSTV DPVEGDLYSL YWEPEMLKSI GQTVSIVATE IFTTSLQQIL GATVLTALIS  60
   61 SIQWPMALSK LGYIL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [722-856]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNPWNVSLDR AWSAGKILAD TLIARNLGAR PITLVGFSIG ARVIFSCLIE LCKKKALGLI  60
   61 ENVYLFGTPA VMKKEQLVMA RSVVSGRFVN GYSDKDWFLA YLFRAAAGGF SAVMGISTIE 120
  121 NVEGIENINC TEFVD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1i6wA
Description: Lipase A
Matching Structure (courtesy of the PDB):

Predicted Domain #8
Region A:
Residues: [857-1073]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHLNYRKSMP KLLKRIGIAV LSEEFVEIEE MMNPEEVKRK RKLINDVDAA QKKLSERKKH  60
   61 NSWVPKWLKP KKSKWKVMVE EAVEEGRDMQ DLPENDVNNN ENENPDEHEG IARQKRRDAA 120
  121 LVDHGALMHE LQLIKQAMHE DEIKNKACLP GEDKEVESSN DFLGESHYKP PSTPKINPPQ 180
  181 SPNNFQLLSA GRTILPEDDD FDPRGKKKVE FSFPDDI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.08
Match: 2v1yB
Description: No description for 2v1yB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle