YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL22B
Organism:	Saccharomyces cerevisiae
Length:	122 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL22B.

Description	E-value	Query Range	Subject Range
gi\|34859197, gi\|... - gi\|34859197\|ref\|XP_345432.1\| PREDICTED: similar to RIKEN cDNA 3110001N18 [Rattus norvegicus], gi\|109...	184.0	[0..1]	[121..1]
gi\|109044347 - gi\|109044347\|ref\|XP_001084467.1\| PREDICTED: similar to ribosomal protein L22 like 1 [Macaca mulatta]	178.0	[0..1]	[121..102]
gi\|113414782, gi... - gi\|30149441\|ref\|XP_114317.3\| PREDICTED: hypothetical protein XP_114317 [Homo sapiens], gi\|119598909\|...	177.0	[0..1]	[121..61]
gi\|94384550, gi\|... - gi\|94384550\|ref\|XP_979887.1\| PREDICTED: similar to 60S ribosomal protein L22 (Heparin-binding protei...	176.0	[0..15]	[120..31]
gi\|15213770 - gi\|15213770\|gb\|AAK92160.1\|AF400188_1 ribosomal protein L22 [Spodoptera frugiperda]	173.0	[0..12]	[121..38]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNTSRKQK VIKTLTVDVS SPTENGVFDP ASYSKYLIDH IKVDGAVGNL GNAIEVTEDG  60
   61 SIVTVVSSAK FSGKYLKYLT KKYLKKNQLR DWIRFVSIRQ NQYKLVFYQV TPEDADEEED 120
  121 DE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.49485
Match:	PF01776.8
Description:	No description for PF01776.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.799	N/A	N/A	d.58.49	YajQ-like
View	Download	0.726	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.712	N/A	N/A	d.58.7	RNA-binding domain, RBD

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits