| Protein: | GYP8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 497 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GYP8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..497] | [1..497] |
|
|
4.0E-72 | [4..485] | [115..553] |
|
|
2.0E-64 | [4..485] | [115..553] |
|
|
4.0E-54 | [6..346] | [114..457] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MPLRSLFHTN QSSHDKDALT RGGYNAYLES LSRCDSGKAE EQKGKVISKL LEKKDVRALR 60
61 YIGLGPLGFV NNSLRKDCWY ELLASQLLID DATEYITPVE KHKDEGQVIL DAERSFGGIV 120
121 DKNLKLQLRK LLVELITRVL RKYPTLNYYQ GYHDIVSVFI MCFSWNVTKE NGLELENLSL 180
181 QEEIDMERLF YCIEAFTLLY LRDFMMNSLD
|
|
Region B: Residues: [272-311] |
1 11 21 31 41 51
| | | | | |
1 QIFDMTISMQ SMRLPLIIYK NLLLQNASEI SKQIEANSDF
|
| Detection Method: |  |
| Confidence: | 37.0 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-271] |
1 11 21 31 41 51
| | | | | |
1 FSFEQLRVIS SLIKESNMKF YNLFKFDENE PLFAIGSILT IFAHNLKPID SGDNNLHKIL 60
61 F
|
| Detection Method: | |
| Confidence: | 37.0 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [312-497] |
1 11 21 31 41 51
| | | | | |
1 FENDFDLRHG AIQTVLQKKL YDEALWEEVL QITRKDATTA SKKALKRVSL NKYSALLNTA 60
61 CGKPGCFDMS TIIFYLSEQT KMNEHYKEEK YHGVAARSKT RALVQRLGHF LPSKYNRWSK 120
121 ISLLIGIVAI LYQLRTTRSL SLVLNLRYMI STKLKDLSHI NINLHHVSHI WVDPIRDILK 180
181 LGHPTR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
