YRC Public Data Repository - Protein Structure Prediction

Protein:	HSP12
Organism:	Saccharomyces cerevisiae
Length:	109 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HSP12.

Description	E-value	Query Range	Subject Range
gi\|18479209 - gi\|18479209\|gb\|AAL06077.1\| 12 kDa heat shock protein [Saccharomyces cerevisiae]	142.0	[0..1]	[109..1]
gi\|1742030 - gi\|1742030\|dbj\|BAA14034.1\| Lg-Hsp12p [Saccharomyces pastorianus]	130.0	[0..1]	[109..1]
gi\|49527199, gi\|... - gi\|50290911\|ref\|XP_447888.1\| unnamed protein product [Candida glabrata], gi\|49527199\|emb\|CAG60837.1\|... gi\|49527199 - gi\|49527199\|emb\|CAG60837.1\| unnamed protein product [Candida glabrata]	101.0	[0..1]	[104..1]
gi\|50306855, gi\|... - gi\|50306855\|ref\|XP_453403.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642537\|emb\|CAH0049... gi\|49642537 - gi\|49642537\|emb\|CAH00499.1\| KLLA0D07634p [Kluyveromyces lactis]	90.0	[0..1]	[108..1]
orf19.10669, orf... - HSP12 CGDID:CAL0002358 Assembly 19, Contig19-20170 (5849, 6355) CDS, translated using codon table 12... gi\|46442534, gi\|... - gi\|68482620\|ref\|XP_714708.1\| hypothetical protein CaO19.10669 [Candida albicans SC5314], gi\|68470563...	89.0	[0..1]	[108..42]
gi\|2367623 - gi\|2367623\|gb\|AAB69701.1\| chaperone/heat shock protein [Emericella nidulans]	81.0	[0..1]	[73..1]
gi\|2130204, gi\|7... - gi\|703462\|gb\|AAB53442.1\| scf1 gene product [Schizosaccharomyces pombe], gi\|2130204\|pir\|\|JC4826 heat-...	80.0	[0..1]	[59..1]
gi\|57228324, gi\|... - gi\|58269864\|ref\|XP_572088.1\| 12 kda heat shock protein (glucose and lipid-regulated protein) [Crypto...	78.0	[0..1]	[84..62]
gi\|67526535, gi\|... - gi\|67526535\|ref\|XP_661329.1\| hypothetical protein AN3725.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	75.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAGRKGFG EKASEALKPD SQKSYAEQGK EYITDKADKV AGKVQPEDNK GVFQGVHDSA  60
   61 EKGKDNAEGQ GESLADQARD YMGAAKSKLN DAVEYVSGRV HGEEDPTKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits