YRC Public Data Repository - Protein Structure Prediction

Protein:	IES1
Organism:	Saccharomyces cerevisiae
Length:	692 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IES1.

Description	E-value	Query Range	Subject Range
gi\|51830307 - gi\|51830307\|gb\|AAU09719.1\| YFL013C [Saccharomyces cerevisiae]	1297.0	[0..1]	[692..1]
gi\|50290909, gi\|... - gi\|50290909\|ref\|XP_447887.1\| unnamed protein product [Candida glabrata], gi\|49527198\|emb\|CAG60836.1\|... gi\|49527198 - gi\|49527198\|emb\|CAG60836.1\| unnamed protein product [Candida glabrata]	459.0	[0..1]	[685..1]
gi\|7635839, gi\|3... - gi\|7635839\|emb\|CAB88643.1\| conserved hypothetical protein [Neurospora crassa], gi\|32412750\|ref\|XP_32... gi\|85099083 - gi\|85099083\|ref\|XP_960714.1\| hypothetical protein NCU01362 [Neurospora crassa OR74A]	457.0	[0..90]	[466..35]
gi\|45201068, gi\|... - gi\|45201068\|ref\|NP_986638.1\| AGL028Cp [Ashbya gossypii ATCC 10895], gi\|44985851\|gb\|AAS54462.1\| AGL02... gi\|44985851 - gi\|44985851\|gb\|AAS54462.1\| AGL028Cp [Ashbya gossypii ATCC 10895]	431.0	[0..4]	[676..5]
gi\|42554706, gi\|... - gi\|46125877\|ref\|XP_387492.1\| hypothetical protein FG07316.1 [Gibberella zeae PH-1], gi\|42554706\|gb\|E...	390.0	[0..40]	[519..2]
gi\|49642535 - gi\|49642535\|emb\|CAH00497.1\| KLLA0D07590p [Kluyveromyces lactis] gi\|49642535, gi\|... - gi\|50306851\|ref\|XP_453401.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642535\|emb\|CAH0049...	389.0	[0..1]	[675..1]
gi\|88183062, gi\|... - gi\|88183062\|gb\|EAQ90530.1\| hypothetical protein CHGG_02465 [Chaetomium globosum CBS 148.51], gi\|1162...	382.0	[0..124]	[466..70]
gi\|40741041, gi\|... - gi\|67528815\|ref\|XP_662070.1\| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	303.0	[0..107]	[470..774]
gi\|111068042 - gi\|111068042\|gb\|EAT89162.1\| hypothetical protein SNOG_03957 [Phaeosphaeria nodorum SN15]	294.0	[0..111]	[538..86]
gi\|83769174 - gi\|83769174\|dbj\|BAE59311.1\| unnamed protein product [Aspergillus oryzae] gi\|169773689 - gi\|169773689\|ref\|XP_001821313.1\| hypothetical protein [Aspergillus oryzae RIB40]	288.0	[0..107]	[502..28]

Back

Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRVYDPIH DTFQLREDNS DETKADSPMQ SVKSGSQEEA SPSSIQSETE TVTTKSIPVI  60
   61 HEIEIDDKND DDSTQSEEEN TNILLNFEPS TVPEATGAST ATG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVTTNTVRRK PKESNASKYN RHLKKPDGEP FNRKDIQFSF MQELLMDKRQ IFTNVLKPLY  60
   61 KNSIVPINID GDKLSINVTD KEYDARTFVF NDKLTFAQLY VLTIATSIKC SKILRDKLLL 120
  121 DQQVAFSTCV LALLVNIGRL NTTINFYLEM TSQLRTFHSV PVLQLHANDP KLLQDTPRLK 180
  181 SILKNLPWGN EQLSLMETYK KVDQNDGEVD TVNKFNIINM LFSICDNSGL IDKRFLSKYV 240
  241 EVESKAQEQD MVDEQNEVKE TEAENEKQES KAAYATTLFD ILDYSKYEPK DRSNILIWLL 300
  301 YIHLETNLSQ EEVEESVRFF NGLEDGAPAG KFILRCTERS YDTDPEDELE FGANQRIKRR 360
  361 EFMSKMEEGR KRER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [478-692]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNVTEVKKPS IGGDKSEEDG EGEDDKSEET VEETRSLLTP TPILESSSPM TLNRKKVTPQ  60
   61 LPKVTPAAPT ETEEEITSAA IIDKNDLNLT PLKKYNSSAT VNKVDKLISL DLNKHVSENG 120
  121 KTQEEFLADL KKSQVPNRLK RRDIGLIKIF NEFEDIPVAS VLGIRGKKRK KFKDNLLGFE 180
  181 TDFMKNLGAS KKVLLNKIER AEIDDEEATA MFKLE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits