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View Structure Prediction Details

Protein: YFL002W-B, YGR161W-A
Organism: Saccharomyces cerevisiae
Length: 438 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFL002W-B, YGR161W-A.

Description E-value Query
Range
Subject
Range
YNL284C-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YN11B_YEAST - Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
557.0 [0..1] [431..1]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLHQNP HSLHGSAYAS VTSKEVPSNQ DPLAVSASNL PEFDRDSTKV NSQQETTPGT  60
   61 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120
  121 YYQPDPHYPL PQYIPPLSTS SPDPIDSQNQ HSEVPQAETK VRNNVLPPHT LTSEENFSTW 180
  181 VKFYIRFLKN SNL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 77.21467
Match: PF01021.9
Description: No description for PF01021.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDIIPNDQGE IKSQMTYEEH AYIYNTFQAF APFHLLPTWV KQILEINYAD ILTVLCKSVS  60
   61 KMQTN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.757 a.50.1 Anaphylotoxins (complement system)
View Download 0.755 a.118.1 ARM repeat
View Download 0.737 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.737 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.695 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.695 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.659 a.159.4 Description not found.
View Download 0.657 a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.624 a.4.1 Homeodomain-like

Predicted Domain #3
Region A:
Residues: [259-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQELKDWIAL ANLEYDGSTS ADTFEITVST IIQRLKENNI NVSDRLACQL ILKGLSGDFK  60
   61 YLRNQYRTKT NMKLSQLFAE IQLIYDENKI MNLNKPSQYK QHSEYKNVSR TSPNTTNTKV 120
  121 TTRNYHRTNS SKPRAAKAHN IATSSKFSRV NNDHINESTV SSQYLSDDNE LSLRPATERI 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle