YRC Public Data Repository - Protein Structure Prediction

Protein:	YER187W
Organism:	Saccharomyces cerevisiae
Length:	141 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YER187W.

Description	E-value	Query Range	Subject Range
YGL262W - Putative protein of unknown function; null mutant displays elevated sensitivity to expression of a m... YGZG_YEAST - Putative uncharacterized protein YGL262W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	180.0	[0..2]	[123..8]
gi\|49640655 - gi\|49640655\|emb\|CAH03113.1\| KLLA0A12045p [Kluyveromyces lactis] gi\|49640655, gi\|... - gi\|50303173\|ref\|XP_451524.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640655\|emb\|CAH0311...	121.0	[0..25]	[140..276]
gi\|44985436, gi\|... - gi\|45200738\|ref\|NP_986308.1\| AGL359Cp [Ashbya gossypii ATCC 10895], gi\|44985436\|gb\|AAS54132.1\| AGL35... gi\|44985436 - gi\|44985436\|gb\|AAS54132.1\| AGL359Cp [Ashbya gossypii ATCC 10895]	67.0	[0..32]	[140..269]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIDQIVAAV PGVPDISGNA SALSLQRRSQ EFATSWISMT YSQSYGDLAQ NWQNDEGGAG  60
   61 NFDSYAEEKL QNFFSGNRDW KYCFAAEDTK NGEPLDYDDI PGDGAGTGSA FKSEIYFNTY 120
  121 GGIDNYCNDE HIGAQNTGDG R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits