YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP10
Organism:	Saccharomyces cerevisiae
Length:	244 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP10.

Description	E-value	Query Range	Subject Range
FMP10 - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi... FMP10_YEAST - Uncharacterized mitochondrial membrane protein FMP10 OS=Saccharomyces cerevisiae (strain ATCC 204508...	1.0E-81	[1..244]	[1..244]
SPAC3A12.08 - conserved fungal protein YDL8_SCHPO - Uncharacterized protein C3A12.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A12....	6.0E-40	[36..219]	[16..211]
gi\|18490449 - gi\|18490449\|gb\|AAH22612.1\| Them4 protein [Mus musculus]	5.0E-31	[83..233]	[54..197]
gi\|25490507 - pir\|\|B83975 hypothetical protein BH2602 [imported] - Bacillus halodurans (strain C-125) gi\|10175223, gi\|... - gi\|15615165\|ref\|NP_243468.1\| hypothetical protein BH2602 [Bacillus halodurans C-125], gi\|10175223\|db...	2.0E-28	[77..239]	[1..167]
THEM2_PONPY - Thioesterase superfamily member 2 - Pongo pygmaeus (Orangutan) ACOT13 - acyl-CoA thioesterase 13 ACO13_PONAB - Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1	1.0E-24	[110..232]	[17..135]
gi\|18491135, gi\|... - gi\|18491135\|gb\|AAL69536.1\| At1g04290/F19P19_27 [Arabidopsis thaliana], gi\|13605902\|gb\|AAK32936.1\|AF3...	3.0E-24	[101..240]	[16..155]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRIAIAQI RTYTNGVVFK TASKPKRRWI PWTIFGGSFL GGWYLTQHMT FTDLLAYWRY  60
   61 DALPKNADEV VKYHADLNRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNGLPIVKQL ENAGFVQVIA NEEENLLVSR ALNTPGGVAI PPRVYYNPSR RETVGLYHLG  60
   61 MKLTGYPFLI HGGILATVIE DLMKEAIRLE KGTKNINQET KNLSISYKFP TLANQFVVVR 120
  121 TTDLQQYGNK TKLKAELMDQ SGNRTLVKAN ATFSSEQGNP KEEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits