YRC Public Data Repository - Protein Structure Prediction

Protein:	PET122
Organism:	Saccharomyces cerevisiae
Length:	254 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET122.

Description	E-value	Query Range	Subject Range
gi\|151944871 - gi\|151944871\|gb\|EDN63130.1\| mitochondrial translational activator [Saccharomyces cerevisiae YJM789] PT122_YEAST - Protein PET122, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PET122 PE=... PET122 - Mitochondrial translational activator specific for the COX3 mRNA, acts together with Pet54p and Pet4... gi\|190405712 - gi\|190405712\|gb\|EDV08979.1\| translational activator of cytochrome C oxidase subunit III [Saccharomyc...	0.0	[1..254]	[1..254]
PT122_SACBA - Protein PET122, mitochondrial OS=Saccharomyces bayanus GN=PET122 PE=3 SV=1	0.0	[1..254]	[1..260]
PT122_LACKL, PT2... - (O13377) PET122 protein, mitochondrial precursor, Protein PET122, mitochondrial OS=Saccharomyces klu... PT122_LACK1 - Protein PET122, mitochondrial OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 / NBR...	2.0E-80	[6..213]	[10..212]
gi\|12003129 - gi\|12003129\|gb\|AAG43465.1\|AF195007_4 Yer153p [Eremothecium gossypii]	7.0E-66	[6..213]	[3..205]
gi\|2583064 - gi\|2583064\|gb\|AAB82602.1\| Pet122p [Saccharomyces servazzii]	1.0E-65	[1..204]	[6..215]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTITKRLVT TDVRSRILLS SLNGKMSDAL ALLRQQQQTS VDVELLHTML ARAAALAHAD  60
   61 TIAYMWYQHV MPRRLPVEGR LLCEMAGVAL YQDRLFLPAQ FLQHYQAMNR DRRTSPEDEL 120
  121 IEYELRRIKV EAFARGTMHS TALREKWKVF LQEMDTLPGQ PPLRLRDFPQ MTKAMGIALM 180
  181 QQDEQAAALA LFGRQPLVIK NEWSLPLLLA GVLWHVPGPA QARRVLAEFR QSYRGLPLLD 240
  241 AELVIKRRGF EINT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits