YRC Public Data Repository - Protein Structure Prediction

Protein:	SPI1
Organism:	Saccharomyces cerevisiae
Length:	148 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPI1.

Description	E-value	Query Range	Subject Range
gi\|16508143 - gi\|16508143\|gb\|AAL17912.1\| intestinal mucin [Mamestra configurata]	137.0	[0..21]	[141..607]
gi\|51572465 - gi\|51572465\|gb\|AAU07725.1\| Sed1-2p [Saccharomyces pastorianus]	81.0	[0..31]	[123..104]
gi\|50956648 - gi\|50956648\|gb\|AAT90843.1\| SED1 [Saccharomyces kudriavzevii]	81.0	[0..31]	[123..61]
gi\|50956640 - gi\|50956640\|gb\|AAT90839.1\| SED1-1 [Saccharomyces bayanus]	80.0	[0..22]	[123..70]
gi\|45269279 - gi\|45269279\|gb\|AAS56019.1\| YDR077W [Saccharomyces cerevisiae]	75.0	[0..31]	[123..133]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSNAKLLLS LAMASTALGL VSNSSSSVIV VPSSDATIAG NDTATPAPEP SSAAPIFYNS  60
   61 TATATQYEVV SEFTTYCPEP TTFVTNGATF TVTAPTTLTI TNCPCTIEKP TSETSVSSTH 120
  121 DVETNSNAAN ARAIPGALGL AGAVMMLL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.53
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits