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View Structure Prediction Details

Protein: LSM5
Organism: Saccharomyces cerevisiae
Length: 93 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM5.

Description E-value Query
Range		 Subject
Range
gi|34902916, gi|... - gi|6016876|dbj|BAA85219.1| unnamed protein product [Oryza sativa (japonica cultivar-group)], gi|3490...
 1.0E-20 [6..89] [1..77]
LSM4_TOBAC - Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1
 5.0E-19 [6..89] [1..77]
LSM4_FAGSY - Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1
 7.0E-19 [6..89] [1..77]
LSM4_MOUSE - U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1
 9.0E-19 [6..89] [1..77]
LSM4_ORYSJ - Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE...
LSM4_ORYSA - Probable U6 snRNA-associated Sm-like protein LSm4 - Oryza sativa (Rice)
 1.0E-18 [6..89] [1..77]
gi|13161882 - gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes]
 2.0E-18 [6..89] [1..77]
gi|5870129 - gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens]
 7.0E-18 [16..88] [13..87]

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Predicted Domain #1
Region A:
Residues: [1-93] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPEILPLE VIDKTINQKV LIVLQSNREF EGTLVGFDDF VNVILEDAVE WLIDPEDESR  60
   61 NEKVMQHHGR MLLSGNNIAI LVPGGKKTPT EAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.85005
Match: 1i81A_
Description: Archaeal homoheptameric Sm protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
9.36615441177233 bayes_pls_golite062009
RNA binding 5.81718051012035 bayes_pls_golite062009
nucleic acid binding 2.69031444148163 bayes_pls_golite062009
mRNA binding 2.57166143288861 bayes_pls_golite062009
binding 2.04681172391952 bayes_pls_golite062009
protein binding 0.441246606284457 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle