| Protein: | PMD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1753 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1753] | [1..1753] |
|
|
1.0E-4 | [132..245] | [420..520] |
|
|
8.0E-4 | [126..176] | [47..95] |
|
|
0.009 | [729..1087] | [371..704] |
|
Region A: Residues: [1-129] |
1 11 21 31 41 51
| | | | | |
1 MTVLQPPSSV CYPLNLPIVP NPNLDEATRK KLTLECRTGA AVELARSGVF VHGGLTLPLN 60
61 LTIINSLQLQ KELILYFGKQ KDRNADFKTL ADWISPEIFF LDLISRTWQR INTTIDTTSE 120
121 NELNNGLSF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | a.7.1 | Spectrin repeat |
| View | Download | 0.858 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.243 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.239 | a.29.2 | Bromodomain |
| View | Download | 0.208 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
|
Region A: Residues: [130-237] |
1 11 21 31 41 51
| | | | | |
1 KERLFHSMCF TESNIYIFGG LMVSPHNGYE LIATNELWKL DLKTKCWSLI SENPQITRRF 60
61 NHSMHVLNEN NENQDTKLII VGGLDNMDIP VKKIDIFNLR TSLWESES
|
| Detection Method: | |
| Confidence: | 5.356547 |
| Match: | PF01344 |
| Description: | Kelch motif |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [238-1753] |
1 11 21 31 41 51
| | | | | |
1 KSDENPASKG SSKILVNIDG MPISLSHDSN FSVLIENNQA EIPTLALYYP QREANTSRRG 60
61 TDDGSFSTYA HDLDDKSKLP KHHHHHHGDL KYFESDDADE NAVKTLMSPI VILPLLGNSQ 120
121 GARMTSNPTQ NNKENSILQV PFHLQYPSGN YFNYNIVVIG FYPDPQPSNL HCFIYNIASG 180
181 KWIRVNIACT ECSISMHRFW KLLIWKSHHQ ALLLGTRTDD FCSPSVQKFD HILSFSLPML 240
241 NGYNKLVNTK HTRTNNGIAN SHNLNVNLSL YDHLPYSNSS TIEHTNPYTV TQGYSLDDSG 300
301 IPRLTSTATS QFENYSRYIT VPLEMESTSS IFPPYAMVLG KDALEIFGKT LSDFEFITAD 360
361 GDSIGVPVYL LRKRWGRYFD SLLSNGYANT SFNYEFNGDT SNIISFSPHT ASKTTKFGNS 420
421 SQSSNGSLEK YFSKNGNSKS NSNTSLKKPH SVDFTSSTSS PKQRAISHNK LSPSEPILCA 480
481 DEEDSRSNTL KQHATGDTGL KETGTSNKRP ISTTCSSTGM VFRVPFQDMK NSKLGLSEQS 540
541 GRSTRASSVS PPPVYKKSTN DGNDSNCTLS NTPLVYRRAS TVGTTTNSSV DDGFSSIRRA 600
601 SHPLQSYIIA KSSPSSISKA SPAEKAFSRR KSSALRFIAS PNQSRQTSFA STASTASVVS 660
661 STSGRRRNSN QISHLGSSAS LPNSPILPVL NIPLPPQEKI PLEPLPPVPK APSRRSSSLA 720
721 EYVQFGRDSP VASRRSSHST RKSSSSDARR ISNSSLLRNT LDSQLLSNSY GSDIPYEASI 780
781 QEYGMNNGRD EEEDGDNQDY GCISPSNIRP IFSTINAINI NGNFKEGEFF SSKSYINNEK 840
841 SRRLSYISNP ESVESTNSNN NAIIELEPLL TPRSLYMPWS TASVRAFAEF FYTAQINGKW 900
901 LLAPVTLDLL IMAKIYEIPI LYELITEVLY KIISKKEEGL SVTCEALLNL FQQKVSRYCN 960
961 ENEGKIRKQL DSSESYQDTL EIKRSLANID NGYVDSYLLR NTSMAQSIHY TDDSNGETEI1020
1021 DMHHTGISSI GSLANRAVPT VFAGGPRDSH NSIGSIAFPS NSGVQNIRRS VSLFSPATKK1080
1081 KSSLSRETDP LDTSDQFTDD VPDSGPVSRQ QNFPRRSSSF TETVPTEPTR YNYQNLDSSK1140
1141 SNRASDDKEE QNEQATLQDI SNFDKYKVET LQKRNSNDGK DLDRTNDPLK NRGTEIPQNS1200
1201 SNLETDPFIR DSFDSDSGSS FRSDSDDLDS QLGILPFTKM NKKLQEQTSQ EFDDSIDPLY1260
1261 KIGSSTPGSS RLHGSFSKYI RPNSQREDGS EYVNISSLEN MVSPNALPPV DYVMKSIYRT1320
1321 SVLVNDSNLM TRTKEAIELS KVLKKLKKKV LQDISQMDDE MRETGKPIFA RGSSSPTLSR1380
1381 QHSDVATPLK QQENTRPALK FASSSPISEG FRKSSIKFSQ APSTQISPRT SVTDFTASQQ1440
1441 RRQHMNKRFS TQTTHSTSAL FMNPAFMPSA VNTGRKESEG HCEDRSATAN RTNRKEDATT1500
1501 NDNDNIAPFP FFGKRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [727-945] |
1 11 21 31 41 51
| | | | | |
1 LKQHATGDTG LKETGTSNKR PISTTCSSTG MVFRVPFQDM KNSKLGLSEQ SGRSTRASSV 60
61 SPPPVYKKST NDGNDSNCTL SNTPLVYRRA STVGTTTNSS VDDGFSSIRR ASHPLQSYII 120
121 AKSSPSSISK ASPAEKAFSR RKSSALRFIA SPNQSRQTSF ASTASTASVV SSTSGRRRNS 180
181 NQISHLGSSA SLPNSPILPV LNIPLPPQEK IPLEPLPPV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [946-1095] |
1 11 21 31 41 51
| | | | | |
1 PKAPSRRSSS LAEYVQFGRD SPVASRRSSH STRKSSSSDA RRISNSSLLR NTLDSQLLSN 60
61 SYGSDIPYEA SIQEYGMNNG RDEEEDGDNQ DYGCISPSNI RPIFSTINAI NINGNFKEGE 120
121 FFSSKSYINN EKSRRLSYIS NPESVESTNS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1096-1299] |
1 11 21 31 41 51
| | | | | |
1 NNNAIIELEP LLTPRSLYMP WSTASVRAFA EFFYTAQING KWLLAPVTLD LLIMAKIYEI 60
61 PILYELITEV LYKIISKKEE GLSVTCEALL NLFQQKVSRY CNENEGKIRK QLDSSESYQD 120
121 TLEIKRSLAN IDNGYVDSYL LRNTSMAQSI HYTDDSNGET EIDMHHTGIS SIGSLANRAV 180
181 PTVFAGGPRD SHNSIGSIAF PSNS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1300-1433] |
1 11 21 31 41 51
| | | | | |
1 GVQNIRRSVS LFSPATKKKS SLSRETDPLD TSDQFTDDVP DSGPVSRQQN FPRRSSSFTE 60
61 TVPTEPTRYN YQNLDSSKSN RASDDKEEQN EQATLQDISN FDKYKVETLQ KRNSNDGKDL 120
121 DRTNDPLKNR GTEI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1434-1666] |
1 11 21 31 41 51
| | | | | |
1 PQNSSNLETD PFIRDSFDSD SGSSFRSDSD DLDSQLGILP FTKMNKKLQE QTSQEFDDSI 60
61 DPLYKIGSST PGSSRLHGSF SKYIRPNSQR EDGSEYVNIS SLENMVSPNA LPPVDYVMKS 120
121 IYRTSVLVND SNLMTRTKEA IELSKVLKKL KKKVLQDISQ MDDEMRETGK PIFARGSSSP 180
181 TLSRQHSDVA TPLKQQENTR PALKFASSSP ISEGFRKSSI KFSQAPSTQI SPR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1667-1753] |
1 11 21 31 41 51
| | | | | |
1 TSVTDFTASQ QRRQHMNKRF STQTTHSTSA LFMNPAFMPS AVNTGRKESE GHCEDRSATA 60
61 NRTNRKEDAT TNDNDNIAPF PFFGKRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
