YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS26B
Organism:	Saccharomyces cerevisiae
Length:	119 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS26B.

Description	E-value	Query Range	Subject Range
gi\|109478147 - gi\|109478147\|ref\|XP_216698.3\| PREDICTED: similar to 40S ribosomal protein S26 [Rattus norvegicus]	186.0	[0..4]	[115..102]
RS26_OCTVU - 40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1	180.0	[0..1]	[116..1]
gi\|38566094, gi\|... - gi\|41053335\|ref\|NP_956319.1\| ribosomal protein S26 [Danio rerio], gi\|38566094\|gb\|AAH62287.1\| Ribosom...	179.0	[0..1]	[103..1]
gi\|15294065 - gi\|15294065\|gb\|AAK95209.1\|AF402835_1 40S ribosomal protein S26-2 [Ictalurus punctatus]	178.0	[0..1]	[103..1]
gi\|61371924 - gi\|61371924\|gb\|AAX43757.1\| ribosomal protein S26 [synthetic construct]	178.0	[0..1]	[101..1]
gi\|113420393, gi... - gi\|113420393\|ref\|XP_001126697.1\| PREDICTED: similar to 40S ribosomal protein S26 [Homo sapiens], gi\|...	178.0	[0..1]	[101..1]
gi\|114621444, gi... - gi\|55631132\|ref\|XP_519920.1\| PREDICTED: similar to 40S ribosomal protein S26-2 isoform 2 [Pan troglo...	177.0	[0..1]	[103..1]
gi\|50604177, gi\|... - gi\|50604177\|gb\|AAH77637.1\| MGC86356 protein [Xenopus laevis], gi\|148230110\|ref\|NP_001086904.1\| MGC86...	177.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKRASNGR NKKGRGHVKP VRCVNCSKSI PKDKAIKRMA IRNIVEAAAV RDLSEASVYP  60
   61 EYALPKTYNK LHYCVSCAIH ARIVRVRSRE DRKNRAPPQR PRFNRDNKVS PAAAAKKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.259637
Match:	PF01283.10
Description:	No description for PF01283.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.538	N/A	N/A	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.433	N/A	N/A	a.66.1	Transducin (alpha subunit), insertion domain
View	Download	0.398	N/A	N/A	b.43.4	Riboflavin synthase domain-like
View	Download	0.375	N/A	N/A	e.37.1	Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits