| Protein: | COM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 443 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COM2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [4..384] | [179..600] |
|
|
0.0 | [8..442] | [381..816] |
|
|
0.0 | [7..442] | [180..646] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MSLYPLQRFE SNDTVFSYTL NSKTELFNES RNNDKQHFTL QLIPNANANA KEIDNNNVEI 60
61 INDLTGNTIV DNCVTTATSS NQLERRLSIS DYRTENGNYY EYEFFGRREL NEPLFNNDIV 120
121 ENDDDIDLNN ESDVLMVSDD ELEVNERFSF LKQQPLDGLN RISSTNNLKN LEIHEFI
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [178-235] |
1 11 21 31 41 51
| | | | | |
1 IDPTENIDDE LEDSFTTVPQ SKKKVRDYFK LNIFGSSSSS NNNSNSLGCE PIQTENSS
|
| Detection Method: | |
| Confidence: | 125.035458 |
| Match: | 1a1iA_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [236-342] |
1 11 21 31 41 51
| | | | | |
1 SQKMFKNRFF RSRKSTLIKS LPLEQENEVL INSGFDVSSN EESDESDHAI INPLKLVGNN 60
61 KDISTQSIAK TTNPFKSGSD FKMIEPVSKF SNDSRKDLLA AISEPSS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.525 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.433 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.400 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.375 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.354 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.343 | a.1.1 | Globin-like |
| View | Download | 0.302 | d.41.2 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |
| View | Download | 0.302 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.280 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.265 | a.74.1 | Cyclin-like |
| View | Download | 0.233 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.216 | f.14.1 | Voltage-gated potassium channels |
|
Region A: Residues: [343-443] |
1 11 21 31 41 51
| | | | | |
1 SPSPSAPSPS VQSSSSSHGL VVRKKTGSMQ KTRGRKPSLI PDASKQFGCE FCDRRFKRQE 60
61 HLKRHVRSLH MCEKPFTCHI CNKNFSRSDN LNQHVKTHAS L
|
| Detection Method: | |
| Confidence: | 2.09691 |
| Match: | 2drpA_ |
| Description: | Tramtrack protein (two zinc-finger peptide) |
Matching Structure (courtesy of the PDB): |
|
