YRC Public Data Repository - Protein Structure Prediction

Protein:	NSA2
Organism:	Saccharomyces cerevisiae
Length:	261 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSA2.

Description	E-value	Query Range	Subject Range
gi\|62642770, gi\|... - gi\|86129704\|gb\|ABC86561.1\| TGF beta-inducible nuclear protein [Rattus norvegicus], gi\|62642770\|ref\|X... NSA2_MOUSE - Ribosome biogenesis protein NSA2 homolog OS=Mus musculus GN=Nsa2 PE=2 SV=1	481.0	[0..1]	[261..1]
gi\|73949746 - gi\|73949746\|ref\|XP_850805.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 (L-name rela... NSA2_BOVIN - Ribosome biogenesis protein NSA2 homolog OS=Bos taurus GN=NSA2 PE=2 SV=1 gi\|149726539 - gi\|149726539\|ref\|XP_001504729.1\| PREDICTED: similar to TGF beta-inducible nuclear protein 1 [Equus c...	480.0	[0..1]	[261..1]
gi\|134025771, gi... - gi\|89272759\|emb\|CAJ83866.1\| TGF beta-inducible nuclear protein 1 [Xenopus tropicalis], gi\|62859971\|r...	479.0	[0..1]	[261..1]
gi\|68534732 - gi\|68534732\|gb\|AAH98657.1\| Cdk105 protein [Rattus norvegicus]	479.0	[0..1]	[261..1]
ENSCJAT00000032828 - null NSA2 - NSA2 ribosome biogenesis homolog (S. cerevisiae) gi\|114599686 - gi\|114599686\|ref\|XP_517704.2\| PREDICTED: hypothetical protein [Pan troglodytes]	479.0	[0..1]	[261..1]
gi\|109077600, gi... - gi\|109077602\|ref\|XP_001103534.1\| PREDICTED: TGF beta-inducible nuclear protein 1 isoform 2 [Macaca m...	478.0	[0..1]	[261..1]
gi\|49118803 - gi\|49118803\|gb\|AAH73255.1\| Unknown (protein for MGC:80606) [Xenopus laevis]	476.0	[0..1]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNDYIERH IKQHGKRLDH EERKRKREAR ESHKISERAQ KLTGWKGKQF AKKRYAEKVS  60
   61 MRKKIKAHEQ SKVKGSSKPL DTDGDALPTY LLDREQNNTA KAISSSIKQK RLEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADKFSVPLPK VRGISEEEMF KVIKTGKSRS KSWKRMITKH TFVGEGFTRR PVKMERIIRP  60
   61 SALRQKKANV THPELGVTVF LPILAVKKNP QSPMYTQLGV LTKGTIIEVN VSELGMVTAG 120
  121 GKVVWGKYAQ VTNEPDRDGC VNAVLLV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits