| Protein: | GLO3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 493 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLO3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..493] | [1..493] |
|
|
0.0 | [12..490] | [6..506] |
|
|
0.0 | [12..491] | [6..515] |
|
|
2.0E-91 | [50..490] | [1..463] |
|
Region A: Residues: [1-163] |
1 11 21 31 41 51
| | | | | |
1 MSNDEGETFA TEQTTQQVFQ KLGSNMENRV CFDCGNKNPT WTSVPFGVML CIQCSAVHRN 60
61 MGVHITFVKS STLDKWTINN LRRFKLGGNH KARDFFLKNN GKQLLNTANV DAKTKYTSPV 120
121 AKKYKIHLDK KVQKDMELYP SELVLNGQDS SDSPLDTDSD ASR
|
| Detection Method: |  |
| Confidence: | 149.154902 |
| Match: | 1dcqA_ |
| Description: | Pyk2-associated protein beta; Pyk2-associated protein beta ARF-GAP domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [164-248] |
1 11 21 31 41 51
| | | | | |
1 STSKENSVDD FFSNWQKPSS NSSSKLNVNT GSLAPKNNTT GSTPKTTVTK TRSSILTASR 60
61 KKPVLNSQDK KKHSILSSSR KPTRL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.537 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.382 | a.64.1 | Saposin |
| View | Download | 0.370 | a.64.1 | Saposin |
| View | Download | 0.334 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.289 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.282 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.276 | a.64.1 | Saposin |
| View | Download | 0.270 | a.46.1 | Methionine synthase domain |
|
Region A: Residues: [249-429] |
1 11 21 31 41 51
| | | | | |
1 TAKKVDKSQA EDLFDQFKKE AQQEKEDEFT NSSSSTKIRQ NDYDSQFMNN SKGNNNNSID 60
61 DINTQPDEFN DFLNDTSNSF DTTRKEQQDT LTPKFAKLGF GMTMNDANDL AKQQKESQKI 120
121 AQGPRYTGRI AERYGTQKAI SSDQLFGRGS FDEAANREAH DKLKTFDNAT SISSSSYFGE 180
181 D
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.257 | 0.173 | retrograde vesicle-mediated transport, Golgi to ER | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [430-493] |
1 11 21 31 41 51
| | | | | |
1 KEVDEFGNPI NSSGSGAGNF DGRNSNNGFI DFNASADDEL QMLRDVVEQG AEKLGSYLRD 60
61 YLRK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.356 | a.39.1 | EF-hand |
| View | Download | 0.301 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.307 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.400 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.256 | b.6.1 | Cupredoxins |
| View | Download | 0.232 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.229 | a.64.1 | Saposin |
| View | Download | 0.215 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.204 | d.58.1 | 4Fe-4S ferredoxins |
