| Protein: | SHO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 367 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHO1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..367] | [1..367] |
|
|
1.0E-86 | [21..361] | [20..354] |
|
|
2.0E-75 | [23..360] | [14..296] |
|
|
9.0E-60 | [23..360] | [3..386] |
|
|
6.0E-32 | [133..359] | [561..782] |
|
|
1.0E-28 | [144..358] | [331..544] |
|
|
2.0E-28 | [144..358] | [294..507] |
|
|
2.0E-28 | [132..359] | [879..1107] |
|
Region A: Residues: [1-253] |
1 11 21 31 41 51
| | | | | |
1 MSISSKIRPT PRKPSRMATD HSFKMKKFYA DPFAISSISL AIVSWVIAIG GSISSASTNE 60
61 SFPRFTWWGI VYQFLIICSL MLFYCFDLVD HYRIFITTSI AVAFVYNTNS ATNLVYADGP 120
121 KKAAASAGVI LLSIINLIWI LYYGGDNASP TNRWIDSFSI KGIRPSPLEN SLHRARRRGN 180
181 RNTTPYQNNV YNDAIRDSGY ATQFDGYPQQ QPSHTNYVSS TALAGFENTQ PNTSEAVNLH 240
241 LNTLQQRINS ASN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [254-367] |
1 11 21 31 41 51
| | | | | |
1 AKETNDNSNN QTNTNIGNTF DTDFSNGNTE TTMGDTLGLY SDIGDDNFIY KAKALYPYDA 60
61 DDDDAYEISF EQNEILQVSD IEGRWWKARR ANGETGIIPS NYVQLIDGPE EMHR
|
| Detection Method: | |
| Confidence: | 76.38764 |
| Match: | 1g83A_ |
| Description: | Fyn proto-oncogene tyrosine kinase, SH3 domain; Tyrosine kinase Fyn |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.42916850671495 | bayes_pls_golite062009 |
| protein binding | 2.08632303609243 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.69497236763657 | bayes_pls_golite062009 |
| signal transducer activity | 1.34867629228264 | bayes_pls_golite062009 |
| molecular transducer activity | 1.34867629228264 | bayes_pls_golite062009 |
| actin binding | 0.75725452085414 | bayes_pls_golite062009 |
| receptor binding | 0.351326788023913 | bayes_pls_golite062009 |
