| Protein: | LSM4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 187 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM4.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-36 | [1..187] | [1..187] |
|
|
3.0E-30 | [1..116] | [1..106] |
|
|
5.0E-26 | [1..107] | [1..116] |
|
|
1.0E-25 | [1..102] | [1..92] |
|
|
1.0E-25 | [1..128] | [1..118] |
|
|
4.0E-25 | [1..108] | [1..98] |
|
|
2.0E-24 | [1..107] | [1..116] |
|
|
3.0E-24 | [1..102] | [1..91] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MLPLYLLTNA KGQQMQIELK NGEIIQGILT NVDNWMNLTL SNVTEYSEES AINSEDNAES 60
61 SKAVKLNEIY IRGTFIKFIK LQDNIIDKVK QQINSNNNSN SNGPGHKRYY N
|
| Detection Method: |  |
| Confidence: | 55.94696 |
| Match: | 1d3bA_ |
| Description: | D3 core SNRNP protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 9.36615441177233 | bayes_pls_golite062009 | |
| RNA binding | 5.81718051012035 | bayes_pls_golite062009 |
| nucleic acid binding | 2.69031444148163 | bayes_pls_golite062009 |
| mRNA binding | 2.57166143288861 | bayes_pls_golite062009 |
| binding | 2.49177223698264 | bayes_pls_golite062009 |
| protein binding | 0.625703802792387 | bayes_pls_golite062009 |
|
Region A: Residues: [112-187] |
1 11 21 31 41 51
| | | | | |
1 NRDSNNNRGN YNRRNNNNGN SNRRPYSQNR QYNNSNSSNI NNSINSINSN NQNMNNGLGG 60
61 SVQHHFNSSS PQKVEF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.819 | 0.053 | rRNA processing | a.60.2 | RuvA domain 2-like |
| View | Download | 0.289 | 0.053 | rRNA processing | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.348 | 0.053 | rRNA processing | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.819 | 0.053 | rRNA processing | a.60.2 | RuvA domain 2-like |
| View | Download | 0.464 | 0.053 | rRNA processing | a.60.2 | RuvA domain 2-like |
| View | Download | 0.348 | 0.053 | rRNA processing | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.289 | 0.053 | rRNA processing | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.225 | 0.053 | rRNA processing | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.225 | 0.053 | rRNA processing | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.224 | 0.053 | rRNA processing | a.4.1 | Homeodomain-like |
| View | Download | 0.212 | 0.053 | rRNA processing | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
